View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_high_95 (Length: 239)
Name: NF15465_high_95
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_high_95 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 52993356 - 52993197
Alignment:
| Q |
80 |
caaatccacaacaatggctataagaaaatcaactaaacttcctcaaacagcactcatcaaacaaatccttaaaagatgttcaagcctagggaagaaacaa |
179 |
Q |
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| T |
52993356 |
caaatccacaacaatggctataagaaaatcaactaaacttcctcaaacagcactcatcaaacaaatccttaaaagatgttcaagtctaggcaagaaacaa |
52993257 |
T |
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| Q |
180 |
caagggtacgttgatcatcatggtcttcgtttggatgttccaaaaggtcactttgttgta |
239 |
Q |
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| T |
52993256 |
caagggtacgttgatcatcatggtcttcgtttggatgttccaaaaggtcactttgttgta |
52993197 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 27393727 - 27393690
Alignment:
| Q |
138 |
aaacaaatccttaaaagatgttcaagcctagggaagaa |
175 |
Q |
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| T |
27393727 |
aaacaaatccttaaaagatgttcaagcttaggaaagaa |
27393690 |
T |
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