View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_low_1 (Length: 853)
Name: NF15465_low_1
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_1 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 12 - 513
Target Start/End: Complemental strand, 41379258 - 41378757
Alignment:
| Q |
12 |
attatacttattagtaaatttggtttcacatattttttctttgcagcgcatttggatatgttgaagatgttaggattccatgccagcagaaaagaatgtt |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41379258 |
attatacgtattagtaaatttggtttcacatattttttctttgcagcgcatttggatatgttgaagatgttaggattccatgccagcagaaaagaatgtt |
41379159 |
T |
|
| Q |
112 |
tggctttgtaacatttgctgatccagaaaccgtgagaatgattttggacaagggaaatcctcattatgttcgtggctctcgtgtgcttgtgaaaccttac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41379158 |
tggctttgtaacatttgctgatccagaaaccgtgagaatgattttggacaagggaaatcctcattatgttcgtggctctcgtgtgcttgtgaaaccttac |
41379059 |
T |
|
| Q |
212 |
agggagaagacaaaggttgttgaaaggtcagaattccatgtcttttcttttcgataataaaggttttgttttctcgttttatggcatcaaattctcattt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41379058 |
agggagaagacaaaggttgttgaaaggtcagaattccatgtcttttcttttcgataataaaggttttgttttctcgttttatggcatcaaattctcattt |
41378959 |
T |
|
| Q |
312 |
aatcttgtaattataattattttctgttcatgttgcataatgaaagtttatgcttctgatttaaatgggaaatgtctgtatagccgtctatattgtttat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
41378958 |
aatcttgtaattataattattttctgttcatgttgcaaaatgaaagtttatgcttctgatttaaatgggaaatgtctgtattgccgtctatattgtctat |
41378859 |
T |
|
| Q |
412 |
agttttctagtatgatgaatgcttattcctcggtgtttattctctggttcttagttcatcctcttgcacaccannnnnnngaagttgtacacatagtagg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41378858 |
agttttctagtatgatgaatgcttattcctcggtgtttattctcttgttcttagttcatcctcttgcacaccatttttttgaagttgtacacatagtagg |
41378759 |
T |
|
| Q |
512 |
ca |
513 |
Q |
| |
|
|| |
|
|
| T |
41378758 |
ca |
41378757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 510 - 835
Target Start/End: Complemental strand, 41378733 - 41378413
Alignment:
| Q |
510 |
ggcaacataccacatatttatcaaaattatttttcaaaaaatgtttaagctcagacgtaagagagagagcttaaacttagnnnnnnnnnnnnnnacacat |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||| |
|
|
| T |
41378733 |
ggcaacataccacatatttatcaaaattatttttcaaaaaatgtttaagctcagccgtaagagag----ctaaaacttagtttttagtttttt-acacat |
41378639 |
T |
|
| Q |
610 |
acaaattgtcatctcttctcaaaaaatgtttgaagggactcccattcttgaagttgccactgtttctcgtgatgaatcggggtctattcttttcattgat |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41378638 |
acaaattgtcatctcttctcaaaaaatgtttgaagggactcccattcttgaagttgccactgtttctcgtgatgaatcggggtctattcttttcattgat |
41378539 |
T |
|
| Q |
710 |
tattgacaaaggggatgataatattgtcactgttcaagtggatttttcactgtcatgtttaggttttatgatggttgttgaatgatttatatagtatagc |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41378538 |
tattgacaaaggggatgataatattgtcactgttcaagtggatttttcactgtcatgtttaggttttatgatggttgttgaatgatttatatagtatagc |
41378439 |
T |
|
| Q |
810 |
tccttattaatggtcactgttttatg |
835 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41378438 |
tccttattaatggtcactgttttatg |
41378413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 22344422 - 22344259
Alignment:
| Q |
62 |
tttggatatgttgaagatgttaggattccatgccagcagaaaagaatgtttggctttgtaacatttgctgatccagaaaccgtgagaatgattttggaca |
161 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| ||| |||||||| ||||| ||||||| ||| |||||||| || | |||||||||||| | |
|
|
| T |
22344422 |
tttggatctgttgaagatgtaaggattccatgccagcagagaaggatgtttggatttgtgacatttgttgaaccagaaactgttaaaatgattttggata |
22344323 |
T |
|
| Q |
162 |
agggaaatcctcattatgttcgtggctctcgtgtgcttgtgaaaccttacagggagaagacaaa |
225 |
Q |
| |
|
|||||||||||||||||||||| || ||||| || ||||||||||| |||| ||||||| |||| |
|
|
| T |
22344322 |
agggaaatcctcattatgttcgaggatctcgggttcttgtgaaaccatacaaggagaagccaaa |
22344259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 206481 - 206423
Alignment:
| Q |
70 |
tgttgaagatgttaggattccatgccagcagaaaagaatgtttggctttgtaacatttg |
128 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||| | |||||||||||||| ||||||| |
|
|
| T |
206481 |
tgttcaagatgtgaggattccataccagcagaagcgtatgtttggctttgttacatttg |
206423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 14610896 - 14610954
Alignment:
| Q |
70 |
tgttgaagatgttaggattccatgccagcagaaaagaatgtttggctttgtaacatttg |
128 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||| | |||||||||||||| ||||||| |
|
|
| T |
14610896 |
tgttcaagatgtgaggattccataccagcagaagcgtatgtttggctttgttacatttg |
14610954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University