View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_10 (Length: 660)
Name: NF15465_low_10
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 321 - 645
Target Start/End: Original strand, 6097035 - 6097359
Alignment:
| Q |
321 |
ttgggttattcctttctattctaataaattccctaagtcatgaagtcatgacgcgggaattgtcttataactcgtaaaacttatcctgtaatgtttaggt |
420 |
Q |
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| T |
6097035 |
ttgggttattcctttctattctaataaattccctaagtcatgaagtcatgacgcgggaattgtcttataactcgtaaaacttatcctgtaatgtttaggt |
6097134 |
T |
|
| Q |
421 |
gcaaaattatgatattttgggcaatacatccatataagtatcagaataaattatcaattttcaacagcacaatctattaccagaatcaaaatagaatcat |
520 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6097135 |
gcaaaattatgatattttggacaatacatccatataagtatcagaataaattatcaattttcaacagcacaatctattacccgaatcaaaatagaatcat |
6097234 |
T |
|
| Q |
521 |
acctgtctcaagtggcaagatcatccatccataaaagagcattgtctcaagaaaattggacacctatgcaaatatgtggagataaacatcagaaaaagga |
620 |
Q |
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| T |
6097235 |
acctgtctcaagtggcaagatcatccatccataaaagagcattgtctcaagaaaattggacacctatgcaaatatgtggagataaacatcagaaaaagga |
6097334 |
T |
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| Q |
621 |
tatatgaatataatttttacatctt |
645 |
Q |
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||||||||||||||||||||||||| |
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| T |
6097335 |
tatatgaatataatttttacatctt |
6097359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 6096648 - 6096864
Alignment:
| Q |
107 |
aaggttgctgccacgaaaaatcatagtaaacggaccatttttgttgaaatcaaaagtcgataatcccatctcaccatttggttatgtctcaaatgaagaa |
206 |
Q |
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| T |
6096648 |
aaggttgctgccacgaaaaatcatagtaaacggaccatttttgttgaaatcaaaagtcgataatcctatctcaccatctggttatgtctcaaatgaagaa |
6096747 |
T |
|
| Q |
207 |
ttgttcgaattaaaagcatctactataaacaaacaatcagtactcacaagcaaaaaccaacatcgacnnnnnnnngttcattcaaaaatccacataactc |
306 |
Q |
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| T |
6096748 |
ttgttcgaatt-aaagcatctactataaacaaacaatcagtactcacaagcaaaaaccaacatcaacaagaaaaagttcattcaaaaatccacataactc |
6096846 |
T |
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| Q |
307 |
ctagtgcccacaccttgg |
324 |
Q |
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|||||||||||||||||| |
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| T |
6096847 |
ctagtgcccacaccttgg |
6096864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 6096554 - 6096609
Alignment:
| Q |
53 |
gtagtaacgaaaggcatggatgccatttaaatattgttgactaaaaatcacattaa |
108 |
Q |
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| T |
6096554 |
gtagtaacgaaaagcatggatgccatttaaatattgttgactaaaaatcacattaa |
6096609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6096490 - 6096530
Alignment:
| Q |
1 |
caaaggggaatcaaatctacttccaatgtggaatttgttat |
41 |
Q |
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| T |
6096490 |
caaaggggaatcaaatctacttccaatgtggaattttttat |
6096530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 531 - 631
Target Start/End: Original strand, 4636289 - 4636389
Alignment:
| Q |
531 |
agtggcaagatcatccatccataaaagagcattgtctcaagaaaattggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaata |
630 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
4636289 |
agtggcaagatcatccatccataaaagagcactatctcaagaaaattggacacctatgcaaatatgtggagataaacatcaaaaaaaggatacatgaata |
4636388 |
T |
|
| Q |
631 |
t |
631 |
Q |
| |
|
| |
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|
| T |
4636389 |
t |
4636389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 546 - 631
Target Start/End: Complemental strand, 46009078 - 46008993
Alignment:
| Q |
546 |
catccataaaagagcattgtctcaagaaaattggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaatat |
631 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |
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| T |
46009078 |
catccataaaagagcattatctcaagaaaattggacacctatgcaaatatgtggagataaacatcaaaaaaatgatacatgaatat |
46008993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 505 - 596
Target Start/End: Complemental strand, 11505093 - 11505007
Alignment:
| Q |
505 |
atcaaaatagaatcatacctgtctcaagtggcaagatcatccatccataaaagagcattgtctcaagaaaattggacacctatgcaaatatg |
596 |
Q |
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|||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||| | |||||||||||||||||||| |
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| T |
11505093 |
atcaaaatggaatcatacctgtcttaagtggcaa-----tccatccataaaagagtattgtctcatgaacactggacacctatgcaaatatg |
11505007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 321 - 398
Target Start/End: Original strand, 27766374 - 27766451
Alignment:
| Q |
321 |
ttgggttattcctttctattctaataaattccctaagtcatgaagtcatgacgcgggaattgtcttataactcgtaaa |
398 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27766374 |
ttgggttattcctttctattctaaaaaattccctaagtcatgaagtcatgacgcgggaattgtcttatgactcgtaaa |
27766451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 421 - 492
Target Start/End: Complemental strand, 3077264 - 3077193
Alignment:
| Q |
421 |
gcaaaattatgatattttgggcaatacatccatataagtatcagaataaattatcaattttcaacagcacaa |
492 |
Q |
| |
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|||||||| |||| ||||||| ||||||||||||| | |||||||||||||| |||| |||||| ||||||| |
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| T |
3077264 |
gcaaaattctgatgttttgggaaatacatccatatcaatatcagaataaattctcaactttcaatagcacaa |
3077193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 570 - 631
Target Start/End: Complemental strand, 3077165 - 3077104
Alignment:
| Q |
570 |
agaaaattggacacctatgcaaatatgtggagataaacatcagaaaaaggatatatgaatat |
631 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | || ||||| |||||||||| |||||||| |
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| T |
3077165 |
agaacattggacacctatgcaaatatgtggacaaaagcatcacaaaaaggatacatgaatat |
3077104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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