View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_101 (Length: 243)
Name: NF15465_low_101
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_101 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42074059 - 42074285
Alignment:
| Q |
1 |
ttagaccctagacaagatcgacgcgcacaattctcgtcgtttgttgcactaaggaatttgagctggaatgaagttttgaaaaaaggtacaaaatattata |
100 |
Q |
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| T |
42074059 |
ttagaccctagacaagatcgacgcgcacaattctcatcgtttgttgcactaaggaatttgagctggaatgaagttttgaaaaaaggtacaaaatattata |
42074158 |
T |
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| Q |
101 |
gtgaagaattcagcaaattctgtgaccaaaaaatgagttgcataattactacacttaattggttaaggccttggcctgagccactacttcaagcnnnnnn |
200 |
Q |
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| T |
42074159 |
gtgaagaattcagcaaattctgtgaccaaaaaatgagttgcataattactacacttaattggttaaggccttggcctgagccactacttcaagctttttt |
42074258 |
T |
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| Q |
201 |
ngtggcagcaaaatgcatttggttgct |
227 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42074259 |
tgtggcagcaaaatgcatttggttgct |
42074285 |
T |
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Back To:
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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 227
Target Start/End: Original strand, 24877071 - 24877269
Alignment:
| Q |
29 |
aattctcgtcgtttgttgcactaaggaatttgagctggaatgaagttttgaaaaaaggtacaaaatattatagtgaagaattcagcaaattctgtgacca |
128 |
Q |
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| T |
24877071 |
aattctcgtcattcgttgctcttaggaatttgagctggaatgaagtactgagaaagggaacaaaatattacagtgaagagtttagcaagttttgtgatca |
24877170 |
T |
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| Q |
129 |
aaaaatgagttgcataattactacacttaattggttaaggccttggcctgagccactacttcaagcnnnnnnngtggcagcaaaatgcatttggttgct |
227 |
Q |
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| T |
24877171 |
gaaaatgagttgtattaccagtactctaaattggattaggccttggcctgaacagctccttcaagctttctttgtggctgcaaaatgcatgtggttgct |
24877269 |
T |
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