View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_104 (Length: 241)
Name: NF15465_low_104
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_104 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 36610192 - 36610406
Alignment:
| Q |
14 |
agattattctaacaatgacaataacaagaatgtctcagactctacccttgttgttgctactgatcctcctccggcagtggtcacctaagcaatacagttc |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36610192 |
agatgattctaacaatgacaataacaagaatgtctcagactctacccttgttgttgctactgatcctcctccggcagtggtcacctatgcaatacagttc |
36610291 |
T |
|
| Q |
114 |
ccagacgtttccagaattgaagtttttgttggacagaatttccgtcgttacccatcttcacactgctagacgtccacggtgtcgcttccgctcttactga |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36610292 |
ccagacgtttccagaattgaagtttttgatggacagaatttccgtcgttacccatcttcacactgctagacgtccacggtgtcgcttccgctcttactga |
36610391 |
T |
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| Q |
214 |
tgtcaaacctgatga |
228 |
Q |
| |
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||||||||| ||||| |
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| T |
36610392 |
tgtcaaaccagatga |
36610406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 36611877 - 36611672
Alignment:
| Q |
19 |
attctaacaatgacaataacaagaatgtctcagactctacccttgttgttgctactgatcctcctccggcagtggtcacctaagcaatacagttcccaga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | || | |||||||||| |
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| T |
36611877 |
attctaacaatgacaataacaagaatgtctcagactctacccttgttgttgatactgatcctcctccgacagtggtcacctatgtaaaatagttcccaga |
36611778 |
T |
|
| Q |
119 |
cgtttccagaattgaagtttttgttggacagaatttccgtcgtt-------acccatcttcacactgctagacgtccacggtgtcgcttccgctcttact |
211 |
Q |
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|||||| |||||||||||||||| |||||| | |||| |||||| | ||||||||||||||||| |||||| |||||||||| || |||||| |
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| T |
36611777 |
cgtttctagaattgaagtttttgatggacatactttcagtcgttggcatgaatgcatcttcacactgctaggcgtccatagtgtcgcttctgcccttact |
36611678 |
T |
|
| Q |
212 |
gatgtc |
217 |
Q |
| |
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|||||| |
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| T |
36611677 |
gatgtc |
36611672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 36611927 - 36611878
Alignment:
| Q |
14 |
agattattctaacaatgacaataacaagaatgtctcagactctacccttg |
63 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36611927 |
agatgattctaacaatgacaataacaagaatgtctcaaactctacccttg |
36611878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 26050180 - 26050387
Alignment:
| Q |
25 |
acaatgacaataacaagaatgtctcagactctacccttgttgttgctactgatcctcctccggcagtggtcacctaagcaatacagttcccagacgtttc |
124 |
Q |
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|||||||||| ||||||||||| |||||||||| |||| ||||||||| | ||| |||||||| |||||||| |||| |||||||||||||||||| |
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| T |
26050180 |
acaatgacaaaaacaagaatgttacagactctactcttgctgttgctaccaa---tccgccggcagttgtcacctatgcaaaacagttcccagacgtttc |
26050276 |
T |
|
| Q |
125 |
cagaattgaagtttttgttggacagaatttccgtcgtt-------acccatcttcacactgctagacgtccacggtgtcgcttccgctcttactgatgtc |
217 |
Q |
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|||||||||||| ||| ||||||||||||||||||| || ||||||| ||| |||| ||||||||||| ||||||| ||||||||||||| |
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| T |
26050277 |
cagaattgaagtgtttaaaggacagaatttccgtcgttggaatgaacgtgtcttcactctgttagatgtccacggtgttgcttccgttcttactgatgtc |
26050376 |
T |
|
| Q |
218 |
aaacctgatga |
228 |
Q |
| |
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||||| ||||| |
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| T |
26050377 |
aaaccagatga |
26050387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 14636383 - 14636193
Alignment:
| Q |
19 |
attctaacaatgacaataacaagaatgtctcagactctacccttgttgttgctactgatcctcctccggcagtggtcacctaagcaatacagttcccaga |
118 |
Q |
| |
|
|||||||||||| |||||||||||||| | || | | ||| ||||| ||||||| ||||||| | |||||||| |||| |||| |||||||| ||| |
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| T |
14636383 |
attctaacaatggcaataacaagaatgacacatattttactcttgtagttgctagctatcctcc---gacagtggtcgcctatgcaaaacagttcctaga |
14636287 |
T |
|
| Q |
119 |
cgtttccagaattgaagtttttgttggacagaatttccgtcgtt-------acccatcttcacactgctagacgtccacggtgtcgcttccgct |
205 |
Q |
| |
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|||||| ||||||||||||||| |||||| ||||| ||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
14636286 |
cgtttcatgaattgaagtttttgatggacataattttcgtcgttgacatgaacgcatcttcacactgctagacgtccacggtgtcgcttccgct |
14636193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 27075141 - 27075354
Alignment:
| Q |
19 |
attctaacaatgacaataacaagaatgtctcagactctacccttgttgttgctactgatcctcctccggcagtggtcacctaagcaatacagttcccaga |
118 |
Q |
| |
|
||||| |||||||||| ||||||||||| |||||||||| || ||||||||| |||| || ||||| |||||||| |||| |||||||||||| |
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| T |
27075141 |
attctgacaatgacaaaaacaagaatgttacagactctactttttctgttgctaccaatccgcca---gcagttgtcacctatgcaaaacagttcccaga |
27075237 |
T |
|
| Q |
119 |
cgtttccagaattgaagtttttgttggacagaatttccgtcgtt-------acccatcttcacactgctagacgtccacggtgtcgcttccgctcttact |
211 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||| || ||||||| ||| |||| ||||||||||| ||||||| ||||||| |
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| T |
27075238 |
cgtttccagaattgaagtgtttaaaggacagaatttccgtcgttggaatgaacgtgtcttcactctgttagatgtccacggtgttgcttccgttcttact |
27075337 |
T |
|
| Q |
212 |
gatgtcaaacctgatga |
228 |
Q |
| |
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||||||||||| ||||| |
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|
| T |
27075338 |
gatgtcaaaccagatga |
27075354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 2930232 - 2930167
Alignment:
| Q |
14 |
agattattctaacaatgacaataacaagaatgtctcagactctacccttgttgttgctactgatcc |
79 |
Q |
| |
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|||| |||| ||||||||||| | |||||| ||| |||||||||| |||||||||||||| ||||| |
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| T |
2930232 |
agatgattccaacaatgacaacatcaagaaagtcgcagactctactcttgttgttgctaccgatcc |
2930167 |
T |
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