View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_106 (Length: 239)
Name: NF15465_low_106
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_106 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 11354537 - 11354670
Alignment:
| Q |
91 |
ataatctaagcgaaactaataaaggaacaacatgctaagtaaaacccatcagtcatttgaacatcatcaaaataacctatgtcaagccaggcttcagaat |
190 |
Q |
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| T |
11354537 |
ataatctaagcccaactaataaaggaataacatgctaagtaaaacccatcagtcatttgaacatcatcaaaataacctatgtcaaggcaggcttcagaat |
11354636 |
T |
|
| Q |
191 |
acaatacaaaatctctcttcttgtcttgtctctg |
224 |
Q |
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| T |
11354637 |
acaatacaaaatctctcttcttgtcttgtctctg |
11354670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11354513 - 11354545
Alignment:
| Q |
1 |
ttatgaatgaaatttacttaggctataagctaa |
33 |
Q |
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| T |
11354513 |
ttatgaatgaaatttacttaggctataatctaa |
11354545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 9338227 - 9338395
Alignment:
| Q |
1 |
ttatgaatgaaatttacttaggctataagctaatcagaccacaagaaatcaagcagtactaagagacacagattccctgggtgctttaacataatctaag |
100 |
Q |
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| T |
9338227 |
ttatgaatgaattttacttgggctataagctaaccaggacacaaggaatcacacagtactaagagacgcatattacttgggtgctttaacataatctaag |
9338326 |
T |
|
| Q |
101 |
cgaaactaataaaggaacaacatgctaagtaaaacccatcagtcatttgaacatcatcaaaataaccta |
169 |
Q |
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| T |
9338327 |
ctaaactaataaaggaataaaatgctaagtaaaacccaccagtcatttgaacatcatcaaaacaaccta |
9338395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 24507076 - 24506973
Alignment:
| Q |
25 |
ataagctaatcagaccacaagaaatcaagcagtactaagagacacagattccctgggtgctttaacataatctaagcgaaactaataaaggaacaacatg |
124 |
Q |
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||||||||| ||| |||||| ||||| || ||| |||| ||||| || | |||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
24507076 |
ataagctaactagaacacaaggaatcacacaatacaaagatacacatgttgcttgggtgctttaacataatctaagctaaactatcaaaggaacaacatg |
24506977 |
T |
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| Q |
125 |
ctaa |
128 |
Q |
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|||| |
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| T |
24506976 |
ctaa |
24506973 |
T |
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