View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_11 (Length: 658)

Name: NF15465_low_11
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_11
NF15465_low_11
[»] chr3 (1 HSPs)
chr3 (17-642)||(52490132-52490762)


Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 642
Target Start/End: Complemental strand, 52490762 - 52490132
Alignment:
Q  17 cacagaagcacaaggtggcaagtgacaaagaggtccagaatcaaaactcatagannnnnnnnnnnnnnnnnnnnnnnngaagtatgatgtgaggtgaagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                        ||||||||||||||||||||||    
T  52490762 cacagaagcacaaggtggcaagtgacaaagaggtccagaatcaaaactcatagattttttattttatttttgatttttgaagtatgatgtgaggtgaagc 52490663  T
Q  117 atccatatccatatatgaatgaaggaaatatatgatacagaacattcatactatcaattttacattatatattgcctttgacaacatggctaatttttgc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52490662 atccatatccatatatgaatgaaggaaatatatgatacagaacattcatactatcaattttacattatatattgcctttgacaacatggctaatttttgc 52490563  T
Q  217 attaattttgtcttttgccgacaccctttcttgtctgctacatgtaattgatgattgattgacccaacctatgtactatccttcatccaaaatatcaata 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52490562 attaattttgtcttttgccgacaccctttcttgtctgctacatgtaattgatgattgattgacccaacctatgtactatacttcatccaaaatatcaata 52490463  T
Q  317 aagcttagaaatatttaaatttgtttctatctctatttcctcaagtttcattaaccacttgaattttctttcgtttatcattcttgacatgtcagaactt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  52490462 aagcttagaaatatttaaatttgtttctatctctatttcctcaagtttcattaaccacttgaat----tttcgtttatcattcttgacatgtcagaactt 52490367  T
Q  417 ctttgtgagtagtagtacttcctttatttttcttggttat---------tttttcatgaatttagtttagttgaatgaatgaatgaattatgacactttt 507  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52490366 ctttgtgagtagtagtacttcctttatttttcttggttattttttattctttttcatgaatttagtttagttgaatgaatgaatgaattatgacactttt 52490267  T
Q  508 gaaacactaatgatcagtaggcaatgatgaaagaagagagagttcagaggatgataagtggaaaagaattggcagtcttaaaaagaaagcaataaatgca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52490266 gaaacactaatgatcagtaggcaatgatgaaagaagagagagttcagaggatgataagtggaaaagaattggcagtcttaaaaagaaagcaataaatgca 52490167  T
Q  608 tcatgcaaattaaggcattctcttaagaagaaaag 642  Q
    |||||||||||||||||||||||||||||||||||    
T  52490166 tcatgcaaattaaggcattctcttaagaagaaaag 52490132  T

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