View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_113 (Length: 224)
Name: NF15465_low_113
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_113 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 43219378 - 43219581
Alignment:
| Q |
3 |
taatgaaataaaaagataaggactactcacctcagcatgcattacagtcccagcctgcccaaaaagtgttttcaattcctcaacatcggtatcttgagtc |
102 |
Q |
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| T |
43219378 |
taatgaaataaaaagataaggactactcacctcagcatgcactacagtcccagcctgcccaaaaagtgttttcaattcctcaacatcggtatcttgagtc |
43219477 |
T |
|
| Q |
103 |
aaattcccagcgtaaatcttcaaatcttcagagaagaatggcgggttcttctccttatgccggtgagagagagcgagggcgaaaaccttgaagaattatc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43219478 |
aaattcccagcgtaaatcttcaaatcttcagagaagaatggc-ggttcttctccttatgccggtgagagagagcgagggcaaaaaccttgaagaattatc |
43219576 |
T |
|
| Q |
203 |
atatg |
207 |
Q |
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||||| |
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| T |
43219577 |
atatg |
43219581 |
T |
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