View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_116 (Length: 221)
Name: NF15465_low_116
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_116 |
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Alignment Details
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 6619372 - 6619420
Alignment:
| Q |
54 |
aaattcatctcaaaatctcataacaaaacatgcacagttaaatcacacc |
102 |
Q |
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| T |
6619372 |
aaattcatctcaaaatctcataacaaaacatgcacagttaaatcacacc |
6619420 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 6619328 - 6619356
Alignment:
| Q |
22 |
tcaagtattcaaattttcaactcaagtca |
50 |
Q |
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| T |
6619328 |
tcaagtattcaaattttcaactcaagtca |
6619356 |
T |
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