View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_12 (Length: 617)

Name: NF15465_low_12
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_12
NF15465_low_12
[»] chr7 (1 HSPs)
chr7 (78-601)||(29963016-29963542)
[»] chr2 (1 HSPs)
chr2 (78-139)||(6487989-6488050)
[»] chr1 (1 HSPs)
chr1 (78-139)||(46152721-46152782)
[»] chr5 (3 HSPs)
chr5 (78-139)||(2913515-2913576)
chr5 (86-139)||(9762475-9762528)
chr5 (99-139)||(28812572-28812612)
[»] scaffold0689 (1 HSPs)
scaffold0689 (78-128)||(555-605)
[»] chr4 (4 HSPs)
chr4 (99-139)||(16901686-16901726)
chr4 (99-139)||(18350286-18350326)
chr4 (78-121)||(16901722-16901765)
chr4 (78-121)||(18350322-18350365)
[»] chr3 (1 HSPs)
chr3 (102-139)||(45802841-45802878)


Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 78 - 601
Target Start/End: Original strand, 29963016 - 29963542
Alignment:
Q  78 gactaagacaaatcttttttgtcaataaccttagaccaatcaatcgaatatgcattcatatgaaatagagttagctgtccatatatataggacaacaaca 177  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  29963016 gactaagacaaatcttttttatcaataaacttagaccaatcaatcaaatatgcattcatatgaaatagagttagctgtccatatatataggacaaaacca 29963115  T
Q  178 ttacaatcgaaaacaata---cattagaaaaagtcctacaaatgcatgaataaataaaagaaatgaaatcatagctagattaattagaaacccagctcat 274  Q
    ||||||||||||||||||   ||||||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||     
T  29963116 ttacaatcgaaaacaataatacattagaaaaagcactacatatgcatgaaaaaataaaagaaatgaaatcatagctagattaattggaaacccagctcac 29963215  T
Q  275 ctaactatttatgcacatcaagcattagaaaaagctctaaatatgcataaattaattaacacttaaagtaagacactatagatatgtgtgatttattata 374  Q
    ||||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29963216 ctaactatttatgcatatcaggcattagaaaaagcactacatatgcataaattaattaacacttaaagtaagacactatagatatgtgtgatttattata 29963315  T
Q  375 tggtgatgaaaaatcagatccaattaagtagctcgaacaagtggtgaatgaggcattggtgaatgaggagacatcatgtgaggagacataacattctcat 474  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29963316 tggtgataaaaaatcagatccaattaagtagctcgaacaagtggtgaatgaggcattggtgaatgaggagacatcatgtgaggagacataacattctcat 29963415  T
Q  475 caaaccttcttgaagaaaagctaagtctaagattactcttccaacgtttgatttcaactgttttccctttttctcttccattaacaaatgctctaattct 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29963416 caaaccttcttgaagaaaagctaagtctaagattactcttccaacgtttgatttcaactgttttccctttttctcttccattaacaaatgctctaattct 29963515  T
Q  575 cctcaatgcaatctcaactgtttcatg 601  Q
    |||||||||||||||||||||||||||    
T  29963516 cctcaatgcaatctcaactgtttcatg 29963542  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 6488050 - 6487989
Alignment:
Q  78 gactaagacaaatcttttttgtcaataaccttagaccaatcaatcgaatatgcattcatatg 139  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6488050 gacttagacaaatcttttttgtcaataacctcagaccaatcaatcgaatatgcattcatatg 6487989  T

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Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 46152782 - 46152721
Alignment:
Q  78 gactaagacaaatcttttttgtcaataaccttagaccaatcaatcgaatatgcattcatatg 139  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46152782 gacttagacaaatcttttttgtcaataacctcagaccaatcaatcgaatatgcattcatatg 46152721  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 2913576 - 2913515
Alignment:
Q  78 gactaagacaaatcttttttgtcaataaccttagaccaatcaatcgaatatgcattcatatg 139  Q
    |||| |||||||||||||||||||||||||| | | ||||||||||||||||||||||||||    
T  2913576 gacttagacaaatcttttttgtcaataacctcatatcaatcaatcgaatatgcattcatatg 2913515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 9762528 - 9762475
Alignment:
Q  86 caaatcttttttgtcaataaccttagaccaatcaatcgaatatgcattcatatg 139  Q
    ||||||||||||||||||||||| | || ||| |||||||||||||||||||||    
T  9762528 caaatcttttttgtcaataacctcatactaattaatcgaatatgcattcatatg 9762475  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 28812612 - 28812572
Alignment:
Q  99 tcaataaccttagaccaatcaatcgaatatgcattcatatg 139  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  28812612 tcaataacctcagaccaatcaatcgaatatgcattcatatg 28812572  T

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Target: scaffold0689 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0689
Description:

Target: scaffold0689; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 605 - 555
Alignment:
Q  78 gactaagacaaatcttttttgtcaataaccttagaccaatcaatcgaatat 128  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||||||||    
T  605 gacttagacaaatcttttttgtcgataacctcagaccaatcaatcgaatat 555  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 16901726 - 16901686
Alignment:
Q  99 tcaataaccttagaccaatcaatcgaatatgcattcatatg 139  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  16901726 tcaataacctcagaccaatcaatcgaatatgcattcatatg 16901686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 18350326 - 18350286
Alignment:
Q  99 tcaataaccttagaccaatcaatcgaatatgcattcatatg 139  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  18350326 tcaataacctcagaccaatcaatcgaatatgcattcatatg 18350286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 16901765 - 16901722
Alignment:
Q  78 gactaagacaaatcttttttgtcaataaccttagaccaatcaat 121  Q
    |||| |||||||||||||||||||||||||| ||||||||||||    
T  16901765 gacttagacaaatcttttttgtcaataacctcagaccaatcaat 16901722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 18350365 - 18350322
Alignment:
Q  78 gactaagacaaatcttttttgtcaataaccttagaccaatcaat 121  Q
    |||| |||||||||||||||||||||||||| ||||||||||||    
T  18350365 gacttagacaaatcttttttgtcaataacctcagaccaatcaat 18350322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 45802841 - 45802878
Alignment:
Q  102 ataaccttagaccaatcaatcgaatatgcattcatatg 139  Q
    |||||||  |||||||||||||||||||||||||||||    
T  45802841 ataacctccgaccaatcaatcgaatatgcattcatatg 45802878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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