View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_13 (Length: 595)
Name: NF15465_low_13
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 10 - 496
Target Start/End: Original strand, 43218823 - 43219302
Alignment:
| Q |
10 |
attattctcaatactccgtgacaacttagtaacatagacactaaaaggagaatcaaatgcgcgtgggcgttttgggagatcaggtagtgtatttcttata |
109 |
Q |
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| T |
43218823 |
attattctcaatactccgtgacaacttagtaacatagacactaaaaggagaatcaaatgcgtgtgggcgttttgggagatcaggtagtgtatttcttata |
43218922 |
T |
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| Q |
110 |
tcatccttactaacagtcaagaaatttccagctaattcctgtcacacaaaggatgaattagttaatcacattcattctaagtgttgaatcaatcccacac |
209 |
Q |
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| T |
43218923 |
tcatccttactaacagtcaagaaatttccagctaattcctgtcacacaaaggatgaattagttaatcacattcattctaagtgttgaatcaatcccacac |
43219022 |
T |
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| Q |
210 |
tacaaaaatataaacaggaaaacttacatagccattgaacttcttcataggcttctcaacttcttcaacggtactcatggttacacatccaaattaaaca |
309 |
Q |
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| T |
43219023 |
tacaaaaatataaaccggaaaacttacatagccattgaacttcttcatagccttctcaacttcttcaacggtactcatggttacacatcc-----aaaca |
43219117 |
T |
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| Q |
310 |
tttcatattggttccaagtataaattacctgaaatcattttattagggaatttacctgaaaacattttgtattgcttcaattaatttatttgtcatggat |
409 |
Q |
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| T |
43219118 |
tttcatattggttccaagtataaattacctgaaatcattttattagggaatttacctgaaaacattttgtattgcgtcaattaatttatttgtcatggat |
43219217 |
T |
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| Q |
410 |
gttaatttatgctatagactttatcattttattagggaatgcatgtatactaatgtgattaacaatctttcttaatttatataatct |
496 |
Q |
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| T |
43219218 |
gttaatttatgctatagactttatcattttattagggaatgca--tatactaatgtgattaacaatctttcttaatatacataatct |
43219302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 43222412 - 43222468
Alignment:
| Q |
114 |
ccttactaacagtcaagaaatttccagctaattcctgtcacacaaaggatgaattag |
170 |
Q |
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| T |
43222412 |
ccttattaactgtcaacaatcttccatctaattcctgtcacacaaagggtgaattag |
43222468 |
T |
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