View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_15 (Length: 586)
Name: NF15465_low_15
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 9381850 - 9382140
Alignment:
| Q |
18 |
tacacaatcaacctatcataatacatcatcttttttaagttaaat-tgactaaagtcaaccatggatcgaacaattatgtttggctgttggtgcgtataa |
116 |
Q |
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| T |
9381850 |
tacacaatcaacctatcacaatacatcatcttttttaagttaaatatgactaaagtcaaccatggatcgaacaattatgtttggctgttggtgcgtataa |
9381949 |
T |
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| Q |
117 |
actaaattaattaaattacaataaaaaatacattagttttgtccttgaattatttgatattatgtcaaaatttaattgattaagtctaataaggcacgtg |
216 |
Q |
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| T |
9381950 |
actaaattatttaaattacaataaaaaatacattagttttgtccttgaattatttgatattatgtcaaaatttaattgactaagtctaataaggcacgtg |
9382049 |
T |
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| Q |
217 |
ctcatagatgaaatatcaactcatcaatgaatatctatcaaagggaatatttgttaatcaaatccgtaccaattaagtttgctaaaactgg |
307 |
Q |
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| T |
9382050 |
ctcatagatgaaatatcaactcatcaatgaatatgtatcgaagggaatatttgttattcaaatccgtaccaattaagtttgctaaaactgg |
9382140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 389 - 572
Target Start/End: Original strand, 9382263 - 9382446
Alignment:
| Q |
389 |
aaagatacgacttttacataaaaagaaagaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattt |
488 |
Q |
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| T |
9382263 |
aaagatgcgacttttacataaaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattt |
9382362 |
T |
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| Q |
489 |
tgatcctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
572 |
Q |
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| T |
9382363 |
tgatcctcagcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
9382446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 393 - 572
Target Start/End: Original strand, 9399737 - 9399915
Alignment:
| Q |
393 |
atacgacttttacataaaaagaaagaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgat |
492 |
Q |
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| T |
9399737 |
atacgacttgtacataaaa-gaaagaagtagagataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgat |
9399835 |
T |
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| Q |
493 |
cctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
572 |
Q |
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| T |
9399836 |
cctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
9399915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 63 - 296
Target Start/End: Original strand, 9399385 - 9399617
Alignment:
| Q |
63 |
tgactaaagtcaaccatggatcgaacaattatgtttggctgttggtgcgtataaactaaattaattaaattacaataaaaaa-tacattagttttgtcct |
161 |
Q |
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| T |
9399385 |
tgactaaagtcaaccatggatcgaacagttatgtttggctgttggtgcatataaattaaat-aatttaattaaaataaaaaaatacattaattttgtcct |
9399483 |
T |
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| Q |
162 |
tgaattatttgatattatgtcaaaatttaattgattaagtctaataaggcacgtgctcatagatgaaatatcaactcatcaatgaatatctatcaaaggg |
261 |
Q |
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| T |
9399484 |
ggaattatttgatattatgtcaaaatctagttgattaggtctaaca-ggcacgtgctcataaaagaaatatcaactcatcaatgaatatttttcaaaggg |
9399582 |
T |
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| Q |
262 |
aatatttgttaatcaaatccgtaccaattaagttt |
296 |
Q |
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| T |
9399583 |
aatatttgttattcaaatccgtaccaattaagttt |
9399617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 332 - 365
Target Start/End: Original strand, 9382171 - 9382204
Alignment:
| Q |
332 |
tgataacccacttgggttgatatgatgatattag |
365 |
Q |
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| T |
9382171 |
tgataacccacttgggttgatatgatgatattag |
9382204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 529
Target Start/End: Complemental strand, 23243915 - 23243822
Alignment:
| Q |
436 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcggcacaatcaagcaatatatcaagaaagtctct |
529 |
Q |
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| T |
23243915 |
ttaccataatcaaggccttaacgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
23243822 |
T |
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