View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_16 (Length: 584)
Name: NF15465_low_16
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 9085418 - 9085205
Alignment:
| Q |
1 |
aatccatgtccttctcgttcttctttgttcggttcttttgggaatttcgttgacaaagttaaacaatttggtacccttgcaatttctgttatcattggaa |
100 |
Q |
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| T |
9085418 |
aatccatgtccttctcgttcttctttgttcggttcttttgggaatttcgttgacaaagttaaacaatttggtaccctcgcaatttctgttatcattggaa |
9085319 |
T |
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| Q |
101 |
acattttctctgcgatcttgaccttctgttttgcattaggtttgattcttttctaaaattatttctctaattctttgttttgtttctgtattttgggtga |
200 |
Q |
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| T |
9085318 |
acattttctctgcgatcttgaccttctgttttgcattaggtttgattcttttctacaattatttctctaattctttgttttgtttctgtattttgggtga |
9085219 |
T |
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| Q |
201 |
atttgcaatgtcaa |
214 |
Q |
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|||||||||||||| |
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| T |
9085218 |
atttgcaatgtcaa |
9085205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 407 - 584
Target Start/End: Complemental strand, 9085011 - 9084834
Alignment:
| Q |
407 |
caaaattgtaggttattaatgatcttctatttcttggatttttaacatttagatgtggcaatttatatgtttgaagttttaaggtttaatggnnnnnnnn |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9085011 |
caaaattgtaggttattaatgatcttctatttcttggatttttaacatttagatgtgacaatttatatgtttgaagttttaaggtttaatggtttttttt |
9084912 |
T |
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| Q |
507 |
nnnnnnnnnnngaataaggtttaatggattgttttgttctctgcagttggaacattattgggtgctttgacaggagct |
584 |
Q |
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| T |
9084911 |
gtttgttttttgaataaggtttaatggattgttttgttctctgcagttggaacattattgggtgctttgacaggagct |
9084834 |
T |
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