View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_17 (Length: 574)
Name: NF15465_low_17
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 11 - 555
Target Start/End: Complemental strand, 45111065 - 45110514
Alignment:
| Q |
11 |
cagagagtgcatgaatgagtgatttttgtttttcactgatcatttactgatgtatcta-tgtgctagtaatttgaaatcaacggcagttatattaaccac |
109 |
Q |
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| T |
45111065 |
cagagagtgcatgaatgagtgatttttgtttttcactgatcatttactgatgcatctaatgtgcaagtaatttgaaatcaacggcagttatattagccac |
45110966 |
T |
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| Q |
110 |
gtgtcaccaaagacaaaagttaggacacgtgtcatccattctctgttactgattctctgatgccctatgcatgaatgacgagccacggtttcatttgaca |
209 |
Q |
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| T |
45110965 |
gtgtcaccaaagacaaaagttaggacacgtgtcatccattctctgttactgattctctaatgccctatgcatgaatgacgagccacggtttcatttgaca |
45110866 |
T |
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| Q |
210 |
atagaagatgaaactgaaactgaaac------agaaaaagaaaaagagcagtattaattaattttaccatgaatcagtaatttgcaactagtatataaac |
303 |
Q |
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| T |
45110865 |
atagaagatgaaactgaaactgaaactgaaacagaaaaagaaaaagagcagtattaattaattttaccatgaatcagtaatttgcaactagtatataaac |
45110766 |
T |
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| Q |
304 |
actactactcaacaagattgaaaaccacacacttcactccgcagctcttgtcttctacttttgcttatgccttcttaatttgtccttcaacaatttcttt |
403 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45110765 |
actactcctcaacaagattgaaaaccacacacttcactccgcagctcttgtcttctacttttgcttatgccttcttaatttgtccttcaacaatttcttt |
45110666 |
T |
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| Q |
404 |
gtgatcttgtgcattgtctttgtggtgatcatgatggctgcctcggttgatcctttggtggttggtcgtgtgattggtgatgttgttgacatgttcattc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45110665 |
gtgatcttgtgcattgtctttgtggtgatcatgatggctgcctcggttgatcctttggtggttggtcgtgtgattggtgatgttgttgacatgttcattc |
45110566 |
T |
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| Q |
504 |
catctgttggcatgtctgtttactttggtcctaaacatgtcacaaatggttg |
555 |
Q |
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| T |
45110565 |
catctgttggcatgtctgtttactttggtcctaaacatgtcacaaatggttg |
45110514 |
T |
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