View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_20 (Length: 529)

Name: NF15465_low_20
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_20
NF15465_low_20
[»] chr5 (2 HSPs)
chr5 (283-515)||(17052399-17052632)
chr5 (165-266)||(17051590-17051691)
[»] chr2 (6 HSPs)
chr2 (164-343)||(52584-52764)
chr2 (283-515)||(39535228-39535458)
chr2 (396-527)||(52455-52586)
chr2 (1-128)||(52800-52927)
chr2 (165-266)||(33311804-33311905)
chr2 (299-515)||(33313229-33313447)
[»] chr7 (1 HSPs)
chr7 (283-515)||(3027695-3027927)
[»] chr4 (3 HSPs)
chr4 (283-467)||(48535569-48535754)
chr4 (165-266)||(48534761-48534862)
chr4 (1-29)||(3850682-3850710)
[»] chr8 (2 HSPs)
chr8 (165-266)||(39373447-39373548)
chr8 (283-406)||(39372671-39372794)
[»] chr1 (5 HSPs)
chr1 (299-515)||(41187991-41188209)
chr1 (1-124)||(12037671-12037794)
chr1 (304-386)||(4267848-4267930)
chr1 (426-515)||(1810120-1810209)
chr1 (299-393)||(32161698-32161792)
[»] chr6 (1 HSPs)
chr6 (366-490)||(7452026-7452150)
[»] chr3 (1 HSPs)
chr3 (304-357)||(4124165-4124218)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 283 - 515
Target Start/End: Original strand, 17052399 - 17052632
Alignment:
Q  283 ttttataagctttaca-agtgcaaatcaaacatttcacatcataaagggtattacagtcaattttgtattattttgtccagcatattaaaatatcaaaca 381  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || | ||||| ||||||||||    
T  17052399 ttttataagctttacatagtgcaaatcaaacatttcacatcataaagggtatcacagtcaattttgtattattttgtcaagtacattaacatatcaaaca 17052498  T
Q  382 aggtacagtacacaaatgcttgttttgtgcaccatttatcaaacacagtagagtacaaaaagttgtcctgtaacttatacacttgtgttgtactgttctg 481  Q
    |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  17052499 aggtacagtatacaactgcttgttctgtgcaccatttatcaaacacagtagagtacaaaaagttgtcctgtaacttagacacttgtactgtactgttctg 17052598  T
Q  482 tccagtatctatccttttgcaaaacaaacgcacc 515  Q
    || ||||||  | |||||||||||||||||||||    
T  17052599 tctagtatcccttcttttgcaaaacaaacgcacc 17052632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 17051590 - 17051691
Alignment:
Q  165 agtttgagagattgcaaggtatttttggcaaagatcttacaaatggcctcggagctgatgatggaaatggaaatgaaacaattgagaaccaagttagtga 264  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17051590 agtttgagagattgcaaggtatttttggcaaagatcgtgcaaatggcctccgagttgatgatggaaatggaaatgaaacaattgagaaccaagttagtga 17051689  T
Q  265 ta 266  Q
    ||    
T  17051690 ta 17051691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 164 - 343
Target Start/End: Complemental strand, 52764 - 52584
Alignment:
Q  164 tagtttgagagattgcaaggtatttttggcaaagatcttacaaatggcctcggagctgatgatggaaatggaaatgaaacaattgagaaccaagttagtg 263  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52764 tagtttgagagattgcaaggtatttttggcaaagatcttgcaaatggcctcggagctgatgatggaaatggaaatgaaacaattgagaaccaagttagtg 52665  T
Q  264 atatatgaacgcatgttaattttataagctttaca-agtgcaaatcaaacatttcacatcataaagggtattacagtcaat 343  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||    
T  52664 atatatgaatgcatgttaattttataagctttacagagtgcaaatcaaacatttcacatcataaagggtactacattcaat 52584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 283 - 515
Target Start/End: Original strand, 39535228 - 39535458
Alignment:
Q  283 ttttataagctttaca-agtgcaaatcaaacatttcacatcataaagggtattacagtcaattttgtattattttgtccagcatattaaaatatcaaaca 381  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| | ||||| ||||||||||    
T  39535228 ttttataagctttacatagtgcaaatcaaacatttcacatcataaaaggtattatagtcaattttg-attattttgtccagtacattaacatatcaaaca 39535326  T
Q  382 aggtacagtacacaaatgcttgttttgtgcaccatttatcaaacacagtagagtacaaaaagttgtcctgtaacttatacacttgtgttgtactgttctg 481  Q
    |||||||| |||||| || ||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||| ||| ||||  |||||| |||||    
T  39535327 aggtacag-acacaactgtttgttctgtgcaccatttatcaaaca-agtaaagtacaaaaagttgtcctataacttagacatttgtcctgtactattctg 39535424  T
Q  482 tccagtatctatccttttgcaaaacaaacgcacc 515  Q
    | ||||||| ||| ||||||||| ||||| ||||    
T  39535425 tgcagtatccatcattttgcaaatcaaacacacc 39535458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 396 - 527
Target Start/End: Complemental strand, 52586 - 52455
Alignment:
Q  396 aatgcttgttttgtgcaccatttatcaaacacagtagagtacaaaaagttgtcctgtaacttatacacttgtgttgtactgttctgtccagtatctatcc 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  52586 aatgcttgttttgtgcaccatttatcaaacacagtagagtacaaaaatttgtcctgtaacttagacacttgtgttgtactgttctgtctagtatctatcc 52487  T
Q  496 ttttgcaaaacaaacgcacctcagaacctatg 527  Q
    ||||||||||||||||||||||||||||||||    
T  52486 ttttgcaaaacaaacgcacctcagaacctatg 52455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 52927 - 52800
Alignment:
Q  1 atatgctgcatggaaataaataatatatacatttggcgtggaaaattttcaagtatgtctaaatggttgagcggtaagaatgggaatctgcattgcatag 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52927 atatgctgcatggaaataaataatatatacatgtggcgtggaaaattttcaagtatgtctaaatggttgagtggtaagaatgggaatctgcattgcatag 52828  T
Q  101 gcatttggttcaacactcagaacctatg 128  Q
       ||| |||| ||||||||||||||||    
T  52827 atctttcgttccacactcagaacctatg 52800  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 33311804 - 33311905
Alignment:
Q  165 agtttgagagattgcaaggtatttttggcaaagatcttacaaatggcctcggagctgatgatggaaatggaaatgaaacaattgagaaccaagttagtga 264  Q
    ||||| ||||||||||||||||| |||||||||||| | |||||||| | | ||||||||||||||||||||||||||||| |||||| ||||||| |||    
T  33311804 agtttaagagattgcaaggtattgttggcaaagatcgtgcaaatggcattgaagctgatgatggaaatggaaatgaaacaactgagaatcaagttattga 33311903  T
Q  265 ta 266  Q
    ||    
T  33311904 ta 33311905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 299 - 515
Target Start/End: Original strand, 33313229 - 33313447
Alignment:
Q  299 agtgcaaatcaaacatttcacatcataaagggtattaca-gtcaattttgtattattttgtccagcatattaaaatatcaaacaaggtacagtacacaaa 397  Q
    |||||||||||||||||| ||||||||||  |||||||| || |||||||||| ||||||| ||| | ||||| |||||||||||| |||| ||||||      
T  33313229 agtgcaaatcaaacattttacatcataaatagtattacaagtaaattttgtataattttgttcagtacattaacatatcaaacaagatacaatacacagc 33313328  T
Q  398 tgcttgttttgtgcac-catttatcaaacacagtagagtacaaaaagttgtcctgtaacttatacacttgtgttgtactgttctgtccagtatctatcct 496  Q
    ||||||||  | | ||  |  |||||||||||   |||||||||||||||||||  || ||| |||||||   |||||||||||||| |||||  ||| |    
T  33313329 tgcttgttccgcgaacaaaactatcaaacacaacggagtacaaaaagttgtccttcaatttagacacttgccatgtactgttctgtcaagtattcatcat 33313428  T
Q  497 tttgcaaaacaaacgcacc 515  Q
    |||||||| ||||| ||||    
T  33313429 tttgcaaatcaaacacacc 33313447  T

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Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 283 - 515
Target Start/End: Complemental strand, 3027927 - 3027695
Alignment:
Q  283 ttttataagctttaca-agtgcaaatcaaacatttcacatcataaagggtattacagtcaattttgtattattttgtccagcatattaaaatatcaaaca 381  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| | | ||||| ||||||||||    
T  3027927 ttttataagctttacatagtgcaaatcaaacatttcacattataaagggtattatagtcaattttg-attattttgtccggtacattaacatatcaaaca 3027829  T
Q  382 aggtacagtacacaaatgcttgttttgtgcaccatttatcaaacacagtagagtacaaaaagttgtcctgtaacttatacacttgtgttgtactgttctg 481  Q
    | ||| |||||||||  |||| || | ||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||| ||||  | ||||||||||    
T  3027828 acgtaaagtacacaaccgctttttctatgcaccatttatcaaacacagtaaagttcaaaaagttgtcttgtaacttagacatttgtcctatactgttctg 3027729  T
Q  482 tccagtatctatccttttgcaaaacaaacgcacc 515  Q
    || |||||| ||| ||||||||| ||||||||||    
T  3027728 tctagtatccatcattttgcaaatcaaacgcacc 3027695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 283 - 467
Target Start/End: Original strand, 48535569 - 48535754
Alignment:
Q  283 ttttataagctttaca-agtgcaaatcaaacatttcacatcataaagggtattacagtcaattttgtattattttgtccagcatattaaaatatcaaaca 381  Q
    |||||||| ||||||| |||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||    
T  48535569 ttttataaactttacacagtgcaaatcaaacattttatatcataaaggatattacagtcaattttgtattattttgtccagtacattaacatatcaaaca 48535668  T
Q  382 aggtacagtacacaaatgcttgttttgtgcaccatttatcaaacacagtagagtacaaaaagttgtcctgtaacttatacacttgt 467  Q
    | ||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||| |||| |||||||||| ||| ||||    
T  48535669 aagtacagtacacaactgcttgttctgtgtaccatttatcaaacacagtatagtacaaaaaattgtactgtaacttagacaattgt 48535754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 48534761 - 48534862
Alignment:
Q  165 agtttgagagattgcaaggtatttttggcaaagatcttacaaatggcctcggagctgatgatggaaatggaaatgaaacaattgagaaccaagttagtga 264  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48534761 agtttgagagattgcaaggtatttttggcaaagatcgtgcaaatggcttccgagctgatgatggaaatggaaatgaaacaattgagaaccaagttagtga 48534860  T
Q  265 ta 266  Q
    ||    
T  48534861 ta 48534862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 3850682 - 3850710
Alignment:
Q  1 atatgctgcatggaaataaataatatata 29  Q
    |||||||||||||||||||||||||||||    
T  3850682 atatgctgcatggaaataaataatatata 3850710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 39373548 - 39373447
Alignment:
Q  165 agtttgagagattgcaaggtatttttggcaaagatcttacaaatggcctcggagctgatgatggaaatggaaatgaaacaattgagaaccaagttagtga 264  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  39373548 agtttgagagattgcaaggtatttttggcaaagatcgtgcaaatggccttggaggtgatgatggaaatggaaatgaaacagttgagaaccaagttagtga 39373449  T
Q  265 ta 266  Q
    ||    
T  39373448 ta 39373447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 283 - 406
Target Start/End: Complemental strand, 39372794 - 39372671
Alignment:
Q  283 ttttataagctttaca-agtgcaaatcaaacatttcacatcataaagggtattacagtcaattttgtattattttgtccagcatattaaaatatcaaaca 381  Q
    |||||||||||||| | |||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||| | ||||| ||||||||||    
T  39372794 ttttataagctttatatagtgcaaatcaaacatttcatatcataaaaggtattatagtcaattttg-attattttgtccagtacattaacatatcaaaca 39372696  T
Q  382 aggtacagtacacaaatgcttgttt 406  Q
    | ||| ||||||||| |||||||||    
T  39372695 aagtatagtacacaactgcttgttt 39372671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 299 - 515
Target Start/End: Original strand, 41187991 - 41188209
Alignment:
Q  299 agtgcaaatcaaacatttcacatcataaagggtattaca-gtcaattttgtattattttgtccagcatattaaaatatcaaacaaggtacagtacacaaa 397  Q
    |||||||||||||||||| ||||||||||  ||||| || || |||||||||| ||||||| ||  | ||||| |||||||||||| |||| |||||||     
T  41187991 agtgcaaatcaaacatttaacatcataaatagtattgcaagtaaattttgtataattttgttcattacattaacatatcaaacaagatacaatacacaac 41188090  T
Q  398 tgcttgttttgtgcacc-atttatcaaacacagtagagtacaaaaagttgtcctgtaacttatacacttgtgttgtactgttctgtccagtatctatcct 496  Q
    ||||||||  | | ||| | ||||||||||||    ||||||||||||||||||  || ||| ||||||||  |||||||||||||| |||||  ||| |    
T  41188091 tgcttgttccgcgaaccaaattatcaaacacaacgcagtacaaaaagttgtccttcaatttagacacttgtcatgtactgttctgtcaagtattcatcat 41188190  T
Q  497 tttgcaaaacaaacgcacc 515  Q
    |||||||| |||| |||||    
T  41188191 tttgcaaatcaaatgcacc 41188209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 12037671 - 12037794
Alignment:
Q  1 atatgctgcatggaaataaataatatatacatttggcgtggaaaattttcaagtatgtctaaatggttgagcggtaagaatgggaatctgcattgcatag 100  Q
    |||||||||| ||||||||||| ||||||| | ||||| | ||| ||||||||||||||||| |||  ||||||||||||||||||  || |||||||||    
T  12037671 atatgctgcacggaaataaatagtatatacttgtggcgcgaaaagttttcaagtatgtctaactggccgagcggtaagaatgggaaattgtattgcatag 12037770  T
Q  101 gcatttggttcaacactcagaacc 124  Q
       |||| ||||||||| ||||||    
T  12037771 ctctttgattcaacacttagaacc 12037794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 386
Target Start/End: Complemental strand, 4267930 - 4267848
Alignment:
Q  304 aaatcaaacatttcacatcataaagggtattacagtcaattttgtattattttgtccagcatattaaaatatcaaacaaggta 386  Q
    |||||||||||| || |||||||||||||||| ||| ||||||  |||||||||||| |   ||||| |||||||| ||||||    
T  4267930 aaatcaaacattgcatatcataaagggtattatagtaaattttcaattattttgtcctgtgcattaacatatcaaataaggta 4267848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 1810120 - 1810209
Alignment:
Q  426 acagtagagtacaaaaagttgtcctgtaacttatacacttgtgttgtactgttctgtccagtatctatccttttgcaaaacaaacgcacc 515  Q
    ||||| ||||||||||||||||| ||||||| |  |||||||  ||||||||| |||||| ||||||||  |||||| | |||| |||||    
T  1810120 acagtggagtacaaaaagttgtcatgtaactcagtcacttgtcatgtactgttatgtccaatatctatcaatttgcagatcaaatgcacc 1810209  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 393
Target Start/End: Original strand, 32161698 - 32161792
Alignment:
Q  299 agtgcaaatcaaacatttcacatcataaagggtattacagtcaattttgtattattttgtccagcatattaaaatatcaaacaaggtacagtaca 393  Q
    |||| ||| |||||||| ||||||||||||||||||  ||| ||| ||  |||||||||||  |   ||||| ||||||||||||||||| ||||    
T  32161698 agtgaaaaccaaacattgcacatcataaagggtattgtagtaaatgttacattattttgtcttgtgcattaacatatcaaacaaggtacaataca 32161792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 490
Target Start/End: Original strand, 7452026 - 7452150
Alignment:
Q  366 attaaaatatcaaacaaggtacagtacacaaatgcttgttttgtgcaccatttatcaaacacagtagagtacaaaaagttgtcctgtaacttatacactt 465  Q
    ||||| |||||||||||||||  |||||  |||||||||  |||||| || |  ||||||| |||| |  ||||||||||||||||||||| |  || ||    
T  7452026 attaacatatcaaacaaggtatggtacaataatgcttgtcatgtgcatcaatcgtcaaacatagtacaagacaaaaagttgtcctgtaactcagtcattt 7452125  T
Q  466 gtgttgtactgttctgtccagtatc 490  Q
    ||   ||| ||||||||||||||||    
T  7452126 gttcagtattgttctgtccagtatc 7452150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 4124218 - 4124165
Alignment:
Q  304 aaatcaaacatttcacatcataaagggtattacagtcaattttgtattattttg 357  Q
    ||||||||||||||||| ||||||   ||||| ||| |||||||||||||||||    
T  4124218 aaatcaaacatttcacaccataaaaattattaaagtaaattttgtattattttg 4124165  T

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