View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_21 (Length: 511)
Name: NF15465_low_21
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 195 - 489
Target Start/End: Complemental strand, 42253891 - 42253596
Alignment:
| Q |
195 |
atatatgtaataaagattagaaaacttggagtatttcttacggattgtttatggataagaagtgaaaaagtagtttttgttttcattgaataagaagtnn |
294 |
Q |
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| T |
42253891 |
atatatgtaataaagattagaaaacttggagtatttcttacggattgtttatggataagaagtcaaaaagtagtttttgttttcattgaataagaagtaa |
42253792 |
T |
|
| Q |
295 |
nnnnnn-gcttataatctcttctccacacacaccctgtgaacgagtgcagttcctcacataactctactcttctaatgtaaatcattttcatttcctttc |
393 |
Q |
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| T |
42253791 |
aaaaaaagcttataatctcttctccacacacaccctgtgaacgagtgcagttcctcacataactctactcttctaatgtaaatcaatttcatttcctttc |
42253692 |
T |
|
| Q |
394 |
cagtacaaaactctctaatggcgatctcatcacaatccttctcaccttccttcatttcaacccccaacgatttaactcgtctccctttcaccttca |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42253691 |
cagtacaaaactctctaatggcgatctcatcacaatccttctcaccttccttcatttcaacccccaacgatttaactcgtctcccttccaccttca |
42253596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 42254078 - 42253986
Alignment:
| Q |
12 |
cataggcaaggtaactaaactcgaaatcactcgatcaactaaatctaagatcataatatgtgtggtgtgttttgaaatataaaacgagtcaat |
104 |
Q |
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| T |
42254078 |
cataggcagggtaactaaactcgaaatcactcgatcaactaaatctaagatcataatatgtgtggtgtgttttgaaatataaaacgagtcaat |
42253986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 42253958 - 42253915
Alignment:
| Q |
132 |
ggatacaagcattgacaaaaagaaaaattagcagctaacacttg |
175 |
Q |
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| T |
42253958 |
ggatacaagcattgacaaaaagaaaaattagcagctaacacttg |
42253915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 441
Target Start/End: Complemental strand, 12108068 - 12108033
Alignment:
| Q |
406 |
ctctaatggcgatctcatcacaatccttctcacctt |
441 |
Q |
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| T |
12108068 |
ctctaatggcgatctcatcacaatccttctcacctt |
12108033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 20228074 - 20228041
Alignment:
| Q |
409 |
taatggcgatctcatcacaatccttctcaccttc |
442 |
Q |
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| T |
20228074 |
taatggcgatctcatcacagtccttctcaccttc |
20228041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 22122058 - 22122025
Alignment:
| Q |
409 |
taatggcgatctcatcacaatccttctcaccttc |
442 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
22122058 |
taatggcgatctcatcacagtccttctcaccttc |
22122025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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