View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_22 (Length: 498)
Name: NF15465_low_22
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 483
Target Start/End: Complemental strand, 39848573 - 39848100
Alignment:
| Q |
10 |
gttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacataca |
109 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||||||||| | ||| ||||||||| |||| ||||| |||||||| ||||| ||||||| ||| |
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| T |
39848573 |
gttgctaaagagtttggcataccagctcaattccagcgcttttggttatgggaaaagcgtgaaaaccatacatgtcgaccatctcggcttttgacacaca |
39848474 |
T |
|
| Q |
110 |
tcgaggaagcaaaatctgtaagttcatgagattgcttgaagtttttcaatattgttttgctcatatagccgctttaagcatcataatttatgactttttc |
209 |
Q |
| |
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|||| |||||| ||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848473 |
tcgatgaagcacaatctgtaaattcacaaaattgcttgaaacttttcaatattgttttgctcatatagccgctttaagcatcataatttatgactttttc |
39848374 |
T |
|
| Q |
210 |
atctctgattgttgcttatatatctgctttaagcttcataatttatgacttttacccctcatttatgttacatgttgaatctgctcatgtcatttatatc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848373 |
atctctgattgttgcttatatatctgctttaagcttcataatttatgacttttacccctcatttatgttacatgttgaatctgctcatgtcatttatatc |
39848274 |
T |
|
| Q |
310 |
aagctgatacttagttctatctgtggtacctgttttttggccatctttgactaccttctttttatttctttaaattttataatgcatatgcaagttgcaa |
409 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39848273 |
aagctgatacttagttcaatctgtggtacctgttttttggccatctttgacttccttctttttatttctttaaattttataatgtatatgcaagttgcaa |
39848174 |
T |
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| Q |
410 |
gtggtttttatacagattgttttggatcccgcagnnnnnnnctcctctaaatgcttgcgagggtgcttagtttt |
483 |
Q |
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| T |
39848173 |
gtggtttttatacagattgttttggatcccgcagtttttttctcctctaaatgcttgcgagggtgcttagtttt |
39848100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39858336 - 39858114
Alignment:
| Q |
1 |
tagaacatggttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39858336 |
tagaacatggttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctt |
39858237 |
T |
|
| Q |
101 |
tgacatacatcgaggaagcaaaatctgtaagttcatgagattgcttgaagtttttcaatattgttttgctcatatagccgctttaagcatcataatttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| ||||| |
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| T |
39858236 |
tgacatacatcgaggaagcaaaatctgtaagttcatgagattgcttgaagtttttcaatattgttttgctcatatatccccttcaagcttcatattttat |
39858137 |
T |
|
| Q |
201 |
gactttttcatctctgattgttg |
223 |
Q |
| |
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|||||||||||||||| |||||| |
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| T |
39858136 |
gactttttcatctctggttgttg |
39858114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 39899185 - 39898998
Alignment:
| Q |
21 |
gtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacatacatcgaggaagca |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| | ||| |||||||| |||| ||||| |||||| | ||||||||||||| |||| ||||||||| |
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| T |
39899185 |
gtttggcataccagctcaattccagcgcttttggttatgggaaaagcgtcaaaaccatacatgtcgaccttctcggcctttgacaaacattgaggaagca |
39899086 |
T |
|
| Q |
121 |
aaatctgtaagttcatgagattgct-tgaagtttttcaatattgttttgctcatatagccgctttaagcatcataatttatgactttttc |
209 |
Q |
| |
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| |||||| ||||| |||| || ||||| |||||||||| |||||||| ||| | ||| |||| || || |||||||||||||| |
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| T |
39899085 |
ggacctgtaaattcatcagat--ctatgaagcctttcaatatttatttgctcacatactcccttcaagcttcttattttatgactttttc |
39898998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 39912231 - 39912017
Alignment:
| Q |
9 |
ggttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacatac |
108 |
Q |
| |
|
|||||| | |||||| ||||||| |||| |||||||||||||||| | ||| ||||||| ||||| ||||||||| |||| |||||| ||||||||| |
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|
| T |
39912231 |
ggttgccaaagagttcggcataccggctcgattccagcgcttttggctatgggcaaagcgtctaaaccatacatatcgtccatttcggccattgacatac |
39912132 |
T |
|
| Q |
109 |
atcgaggaagcaaaatctgtaagttcatgagattgct-tgaag--tttttcaatattgttttgctcatatagccgctttaagcatcataatttatgactt |
205 |
Q |
| |
|
|| ||||||||| | |||||| || ||||||| || ||||| ||||| |||||| ||||||||||||| || ||| |||| || || | | |||| | |
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| T |
39912131 |
attgaggaagcagcacctgtaaatttatgagat--ctatgaagcttttttgaatattattttgctcatatacccccttcaagcttcttattctgtgacct |
39912034 |
T |
|
| Q |
206 |
tttcatctctgattgtt |
222 |
Q |
| |
|
|||||| |||||||||| |
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|
| T |
39912033 |
tttcatttctgattgtt |
39912017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 39865651 - 39865484
Alignment:
| Q |
9 |
ggttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacatac |
108 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||||||||||||||||| | | |||||||| ||||| ||||| ||| |||| ||| || |||||| | |
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| T |
39865651 |
ggttgctaaagagttttgcataccagctcaattccagcgcttttgggtatttgcaaagcgtgaaaacgatacatgtcgtccatttcgtccgttgacacgc |
39865552 |
T |
|
| Q |
109 |
atcgaggaagcaaaatctgtaagttcatgagattgcttgaagtttttcaatattgttttgctcatata |
176 |
Q |
| |
|
|| ||||||||| | |||||| ||||| |||| ||||||| || |||||||| ||||||| ||||| |
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| T |
39865551 |
attgaggaagcaggacctgtaaattcataagatctcttgaagcttatcaatattattttgctgatata |
39865484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 37467079 - 37466911
Alignment:
| Q |
9 |
ggttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacatac |
108 |
Q |
| |
|
|||||||| |||||| ||||||| | ||||||||||||||||||| | ||| ||||||| |||| ||||||||| || |||| || |||||| | |
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|
| T |
37467079 |
ggttgctaaagagttcggcatacctgttcaattccagcgcttttggctatgggcaaagcgtcaaaaccatacatatcgtcctaatcgtccattgacacaa |
37466980 |
T |
|
| Q |
109 |
atcgaggaagcaaaatctgtaagtt-catgagattgcttgaagtttttcaatattgttttgctcatata |
176 |
Q |
| |
|
|| ||||||||| |||||||||||| ||||| |||||| |||||| || |||| |||| |||||||| |
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|
| T |
37466979 |
attgaggaagcacaatctgtaagttccatgatcttgcttaaagtttatcgatatcatttttctcatata |
37466911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 39898839 - 39898787
Alignment:
| Q |
350 |
ccatctttgactaccttctttttatttctttaaattttataatgcatatgcaa |
402 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||| |||||||||||| |
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|
| T |
39898839 |
ccatctttgactaccttccttttgtttctttaaattttatgatgcatatgcaa |
39898787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 38967973 - 38968016
Alignment:
| Q |
9 |
ggttgctagagagtttggcatactagctcaattccagcgctttt |
52 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
38967973 |
ggttgctaaagagtttggcataccagctcaattccagcgctttt |
38968016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 39858110 - 39858059
Alignment:
| Q |
271 |
tttatgttacatgttgaatctgctcatgtcatttatatcaagctgatactta |
322 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||||||||||||||||| |
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|
| T |
39858110 |
tttatgtttaatgttgaatctgctcatgacatctatatcaagctgatactta |
39858059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 398
Target Start/End: Original strand, 39735517 - 39735563
Alignment:
| Q |
352 |
atctttgactaccttctttttatttctttaaattttataatgcatat |
398 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||||| |||| |
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|
| T |
39735517 |
atcttcgactaccttctttttatttcttcaaattgtataatgtatat |
39735563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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