View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_23 (Length: 496)
Name: NF15465_low_23
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Original strand, 33741777 - 33742206
Alignment:
| Q |
13 |
tgaatacaacggcaaaagagcatgaagaaaacagtgaattcaaagcatctacttcaaaaaatctactgtgtcagtgtgagcacaaagatagcaaagtgtc |
112 |
Q |
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| T |
33741777 |
tgaatacaatggcaaaagagcatgaaaaaaacagtgaattcaaagcatctacttcaaaaaatctaccgtgtcagtgtgagcacaaagatagcaaagtgtc |
33741876 |
T |
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| Q |
113 |
ctattgtgttcttggactatgtgaaacatgctttaaacatgttagtagtttctttcttgtctagatgttagtagcttattttgcatatttcattttgcaa |
212 |
Q |
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| T |
33741877 |
ctattgtgttcttggactatgtgaaacatgctttaaacatgttagtagtttctttcttgtctagatgttagtagcttattttgcatatttcattttgcaa |
33741976 |
T |
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| Q |
213 |
acacaattttcaaatatctttttctccaatctccacttcctttggttaggtgttgaaggcgtcaaacagtgcatacaagagacaggaaaaagaattgttc |
312 |
Q |
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| T |
33741977 |
acacaattttcaaatatctttt-------tctccacttcctttggttaggtgttgaaagcgtcaaacagtgcatacaagagacaggaaaaagaattgctc |
33742069 |
T |
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| Q |
313 |
gccgctgcgctagaaagtatttccgcgtgctcttattttctctttagggaatgtagatttcctctgtttacagctattaatttttacttttctcaaaagt |
412 |
Q |
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| T |
33742070 |
gccgctgcgctagaaagtatttccgcgtgctcttattttctctttagggaatgtagatttcctctgtttacagctattaattcttacttttctcaaaagt |
33742169 |
T |
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| Q |
413 |
gcttttaggggatgattttgagagtgaatcctctaaa |
449 |
Q |
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| T |
33742170 |
gcttttaggggacgattttgagagtgaatcctctaaa |
33742206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 427
Target Start/End: Original strand, 33729490 - 33729669
Alignment:
| Q |
248 |
cttcctttggttaggtgttgaaggcgtcaaacagtgcatacaagagacaggaaaaagaattgttcgccgctgcgctagaaagtatttccgcgtgctctta |
347 |
Q |
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| T |
33729490 |
cttcttttggttaggtggtgaaggcatcaaatagcgcatgcaagggacagaaagaagattttcctgcctctgttctagaaagtaatgccgcttgctctta |
33729589 |
T |
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| Q |
348 |
ttt-tctctttagggaatgtagatttcctctgtttacagctattaatttttacttttctcaaaagtgcttttaggggatga |
427 |
Q |
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| T |
33729590 |
tttctctctctaggga-tctagatttccttagttttcagctattaattctcaattttctcaaaaatgatttcaggggatga |
33729669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 33619529 - 33619587
Alignment:
| Q |
86 |
gtgtgagcacaaagatagcaaagtgtcctattgtgttcttggactatgtgaaacatgct |
144 |
Q |
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| T |
33619529 |
gtgtgaacacaaagatagcaaagtgaactattttgatcttggactgtgtgaatcatgct |
33619587 |
T |
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