View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_25 (Length: 485)
Name: NF15465_low_25
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 24740736 - 24741120
Alignment:
| Q |
1 |
tcatatattaattgggttatactttatttgactgcttttaggagttataatatattgaacacaacggttgctttagaaattcgcagttccaaagaaatta |
100 |
Q |
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| T |
24740736 |
tcatatattaattgggttatactttatttgactgcttttaggagttataatatattgaacacaacagttgctttagaaattcgtagttccaaagaaatta |
24740835 |
T |
|
| Q |
101 |
gagaaaccactgctttaaattcaattat--gttttatgatgaacatataaattttaacatcaaatttataacattatttacatccattgaatttcaggtc |
198 |
Q |
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| T |
24740836 |
gagaaacca-tgctttatattcaattatatgttttatgatgaacatataaattttaacatcaaatttataacattatttacatccattgaatttcaggtc |
24740934 |
T |
|
| Q |
199 |
acatttcaagtctaacaggaaattagagaaaataaatggcaccttgaacacgtttatttcaattgtttttgggaaaagtcaattt--nnnnnnnnnnntc |
296 |
Q |
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| T |
24740935 |
acatttcaagtctaacaggaaattagagaaaataaatggctccttgaacacgtttatttcaattgtttttgggaaaagtcaatttaaaaaaaaataaatc |
24741034 |
T |
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| Q |
297 |
aaaagaccgctcaatcaaataaatagttgaacggaaaaatcaccctcaaataggaaattgataatactacactacaattttaagtt |
382 |
Q |
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| T |
24741035 |
aaaagaccgctcaatcaaataaatagttgaacggaaaaagcaccctcaaacaggaaattgataatactacactacaattttaagtt |
24741120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 402 - 467
Target Start/End: Original strand, 24741150 - 24741215
Alignment:
| Q |
402 |
tcacctccggcgaattcggtttccggctcttcatgaaaaatagccaaaatttcatctagatccatt |
467 |
Q |
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| T |
24741150 |
tcacctccagcgaattcggtttctggctcttcatgaaaaatagccaaaatttcatctagatccatt |
24741215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41210964 - 41210899
Alignment:
| Q |
1 |
tcatatattaattgggttatactttatttgactgcttttaggagttataatat--attgaacacaa |
64 |
Q |
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| T |
41210964 |
tcatatattaattgggttctactttatttgactgcttttaggagttatattattaattgaacacaa |
41210899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 41210651 - 41210575
Alignment:
| Q |
62 |
caacggttgctttagaaattcgcagttccaaagaaattagagaaaccactgctttaaattcaat--tatgttttatgatg |
139 |
Q |
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| T |
41210651 |
caacagttgctttagaaattcgtagttccagagaaattagagaa---actgctttatattcaattatatgttttatgatg |
41210575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 283
Target Start/End: Complemental strand, 42955367 - 42955285
Alignment:
| Q |
202 |
tttcaagtctaacaggaaattagagaaaataaatg-gcaccttgaacacgtttatttcaattgtttttgggaaaagtcaattt |
283 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||| || ||| |||||||| |||| ||| ||||||||||| |
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| T |
42955367 |
tttcaagtctaacaggaaattagagaaaaataatgagcaccttgaagacatttgtttcaattcttttgggggaaagtcaattt |
42955285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 467
Target Start/End: Original strand, 24549230 - 24549299
Alignment:
| Q |
398 |
tgggtcacctccggcgaattcggtttccggctcttcatgaaaaatagccaaaatttcatctagatccatt |
467 |
Q |
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| T |
24549230 |
tgggttacctccagcgaattcggtttctggctcttcataaaaaatagtcaaaatttaatctacatccatt |
24549299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 24548935 - 24548979
Alignment:
| Q |
147 |
aaattttaacatcaaatttataacattatttacatccattgaatt |
191 |
Q |
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| T |
24548935 |
aaattttaacatcaaatttataacattatttgcatccattgaatt |
24548979 |
T |
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