View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_33 (Length: 452)
Name: NF15465_low_33
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 8e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 134 - 319
Target Start/End: Complemental strand, 45126901 - 45126716
Alignment:
| Q |
134 |
cctcaaccatttgattggtgatgccccaatatatgaaaaaacctatggtgtgcgcagcaaaaagaaccatagataattgtccaagccagatatgatattt |
233 |
Q |
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| T |
45126901 |
cctcaaccatttgattggtgatgccccaatatatgaaaaaacctatggtgtgcgcagcaaaaagaaccatagataattgtccaagccagatatgatattt |
45126802 |
T |
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| Q |
234 |
gatgcttgactcagatgtgagaccaacaagacgcagaatggaagaccctcttgtaactggaaagaacaaaaatgcccaacatatgt |
319 |
Q |
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| T |
45126801 |
gatgcttgactcagatgtgagtccaacaagacgcagaatggaagaccctcttgtaaccggaaagaacaaaaatgcccaacatatgt |
45126716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 314 - 436
Target Start/End: Complemental strand, 45124783 - 45124661
Alignment:
| Q |
314 |
atatgtcataattggtttgagacttcttagagaactccttcactttgataaaattatgtttataaaaatatagaataggtaatgtttatttttctaccat |
413 |
Q |
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| T |
45124783 |
atatgtcataattggtttgagacttcttagagaactccttcactttgataaaattatgtttataaaaatatagaataggtaatgtttatttttctaccat |
45124684 |
T |
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| Q |
414 |
ggtaaagaagatgctcaaacttc |
436 |
Q |
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| T |
45124683 |
ggtaaagaagatgctcaaacttc |
45124661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 134 - 319
Target Start/End: Complemental strand, 45109705 - 45109520
Alignment:
| Q |
134 |
cctcaaccatttgattggtgatgccccaatatatgaaaaaacctatggtgtgcgcagcaaaaagaaccatagataattgtccaagccagatatgatattt |
233 |
Q |
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| T |
45109705 |
cctcaatcatttggttagtgatggcccaataaatgataaaaccaatggaatgagcagcaaagagaaccatagataattgtccaagccagatatgatactt |
45109606 |
T |
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| Q |
234 |
gatgcttgactcagatgtgagaccaacaagacgcagaatggaagaccctcttgtaactggaaagaacaaaaatgcccaacatatgt |
319 |
Q |
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| T |
45109605 |
gatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtgactggaaagaacaaaaatgccaaacatatgt |
45109520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 45127028 - 45126940
Alignment:
| Q |
11 |
caaagggcctatttataagaaccttaatttctttttcctcgatctatttgcgggtaattaaattaagattgcacattaaaaacacacac |
99 |
Q |
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| T |
45127028 |
caaagggcctatttataagaaccttaatttctttttcctcgatctatttgcgggtaattaaattaagattgcacattaaaaacacacac |
45126940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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