View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_35 (Length: 436)
Name: NF15465_low_35
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 35074164 - 35073778
Alignment:
| Q |
13 |
agcaaaggtgaacaacatttaccacattttacactttgaattttatagctggttgattcaatacaataccattcaaaattcaggaatttcaacaaaaaat |
112 |
Q |
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| T |
35074164 |
agcaaaggtgaacaacatttaccacattttacactgtgaattttatagctggttgattcaatacaataccattcaaaattcaggaatttcaacaaaaaat |
35074065 |
T |
|
| Q |
113 |
aaatcaatgcaccaagccacagcagaacaaattgggaagacaaattatgcaacaaaaattagtggtgccggagtaactaccacctaaatcctgaggagtg |
212 |
Q |
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| T |
35074064 |
aagtcaatgcaccaagccacagcagaacaaattgggaagacaaattatgcaacaaaaattagtggtgccggagtaactaccacctaat------------ |
35073977 |
T |
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| Q |
213 |
ttgcccaccaagtgggatttttagcggctttagggagaaccgaagccgcatctatggggatatgggagattaattttggaccgtcgttgaccagctaggt |
312 |
Q |
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| T |
35073976 |
---------aagtgggatttttagtggctttagggagaaccgaagccgcatctatggggatatgggagattaattttggaccgtcgttgaccagctaggt |
35073886 |
T |
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| Q |
313 |
cagtttcttttaacaatttataaatggcacaacatattatgtctgcatgcaactatatactactaataattttacaaaaaacacaaagcaactgaatgaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073885 |
cagtttcttttaacaatttataaatggcacaacatattatgtctgcatgcaactatatactactaataattttacaaaaaacacaaagcaactgaatgaa |
35073786 |
T |
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