View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_low_36 (Length: 417)
Name: NF15465_low_36
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_36 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 5011837 - 5012238
Alignment:
| Q |
1 |
gaatttcaaccaaaacaacaacattttaccatggaaggagaccaacaacaacaatgagagaaataagatgattaacattccaaaagaagccgaatttcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5011837 |
gaatttcaaccaaaacaacaacattttaccatggaaggagaccaacaacaacaatgagagaaataagatgattaacattccaaaagaagccgaatttcca |
5011936 |
T |
|
| Q |
101 |
ttaaaacaagaagttcttccatcgaatgattcaactacatcatcgtcaacaacatcgcaatggttaaaactaaaagatccgagaattgtgagggtgtcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5011937 |
ttaaaacaagaagttcttccatcgaatgattcaactacatcatcgtcaacaacatcgcaatggttaaaactaaaggatccgagaattgtgagggtgtcta |
5012036 |
T |
|
| Q |
201 |
gagccttcggaacaaaagatagacatagcaaagtatacacaataaaaggactaagagatagaagggtaaggctttcaatccaaacagcaattcacctcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5012037 |
gagccttcggaacaaaagatagacatagcaaagtatacacaataaaaggactaagagatagaagggtaaggctttcaatccaaacagcaattcacctcta |
5012136 |
T |
|
| Q |
301 |
tgatcttcaagacaggttagggctaaaccaacctagcaaggttgttgattggttgctaaatatagctaaggatgaaattgatgagcttccaccacttcaa |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5012137 |
tgatcttcaagataggttagggctaaaccaacctagcaaggttgttgattggttgctaaatatagctaaggatgaaattgatgagcttccaccacttcaa |
5012236 |
T |
|
| Q |
401 |
at |
402 |
Q |
| |
|
|| |
|
|
| T |
5012237 |
at |
5012238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 173 - 394
Target Start/End: Original strand, 4516182 - 4516403
Alignment:
| Q |
173 |
aaagatccgagaattgtgagggtgtctagagccttcggaacaaaagatagacatagcaaagtatacacaataaaaggactaagagatagaagggtaaggc |
272 |
Q |
| |
|
|||||||| |||||||| || || || ||||| || || ||| ||||||||||||||||||| |||||||| |||| | ||||||||||| ||||||| |
|
|
| T |
4516182 |
aaagatccaagaattgtaagagtatcaagagcttttggtggaaaggatagacatagcaaagtatgcacaataagaggattgagagatagaagagtaaggc |
4516281 |
T |
|
| Q |
273 |
tttcaatccaaacagcaattcacctctatgatcttcaagacaggttagggctaaaccaacctagcaaggttgttgattggttgctaaatatagctaagga |
372 |
Q |
| |
|
||||| | | |||||| ||||| || |||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||| |||||| | |
|
|
| T |
4516282 |
tttcagtaccaacagctattcaactttatgatcttcaagataggttagggcttaatcaacctagcaaagttgttgattggttgctcaatgcagctaaaca |
4516381 |
T |
|
| Q |
373 |
tgaaattgatgagcttccacca |
394 |
Q |
| |
|
|| |||||| | ||||||||| |
|
|
| T |
4516382 |
agatattgatcaacttccacca |
4516403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 7969208 - 7969305
Alignment:
| Q |
215 |
aaagatagacatagcaaagtatacacaataaaaggactaagagatagaagggtaaggctttcaatccaaacagcaattcacctctatgatcttcaaga |
312 |
Q |
| |
|
|||||||| ||||||||||| | ||||||| ||| |||||||||||||| ||||||||||| | | |||||||||||| | |||||||||||||| |
|
|
| T |
7969208 |
aaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataaggctttcagttccaacagcaattcaattatatgatcttcaaga |
7969305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University