View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_38 (Length: 415)
Name: NF15465_low_38
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 138 - 370
Target Start/End: Original strand, 6246239 - 6246470
Alignment:
| Q |
138 |
tgtatggttagggttattagattcgtggaatttgggtttcctaatttaattactgcttgtcacgtgcgcacacacacttagtcagttacctttccttttt |
237 |
Q |
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| T |
6246239 |
tgtatggttagggttattagattcgtggaatttgggtttcctaatttaattactgcttgtcacgtgcgcacacacacttagtcagttacctttccttt-- |
6246336 |
T |
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| Q |
238 |
tgtttgtttctttgtttaagcagttggtagattccaatgttcggtaagatttagcctgtcaa---aagaagaattttcaaaacattctgtaggtatatct |
334 |
Q |
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| T |
6246337 |
--tttgtttctttgtttaagcagttggtagattccaatgttcggtaagatttagcctgtcaaaagaagaagaattttcaaaacattctgtaggtatctct |
6246434 |
T |
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| Q |
335 |
ctattatctgcttccataatttaggttggtctttgt |
370 |
Q |
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| T |
6246435 |
ctattatctgcttccataatttaggttggtctttgt |
6246470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 6245888 - 6245944
Alignment:
| Q |
20 |
gttgctgtaaatgcaatagcccagtaattttaaggctgatctacaaggatgttgatt |
76 |
Q |
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| T |
6245888 |
gttgctgtaaatgcaatagcccagtaattttaaggctgatctacaaggatgttgatt |
6245944 |
T |
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