View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_39 (Length: 410)
Name: NF15465_low_39
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 3 - 396
Target Start/End: Original strand, 6577275 - 6577664
Alignment:
| Q |
3 |
cataggtagttccatgtatttggaaagtaaagtgtacttcgatggagtgcatgaagcatataatatgaaattgtatgcatatgcatgagtgggttttgga |
102 |
Q |
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| T |
6577275 |
catagatagttccatgtatttggaaagtaaagtgtacttcgatggagtgcatgaagcatataatatgaaattgtatgcatatgcatgagtgggttttgga |
6577374 |
T |
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| Q |
103 |
ttaaatacaccctatcaaaggttgnnnnnnnnnnngtcacggatgaattttgatttacgtcattatcaatgaatcccatgtctacacacacaacaaaaac |
202 |
Q |
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| T |
6577375 |
ttaaatacaccctatcaaaggttgtttttttttt-gtcacggatgaattttgatttacgtcattatcaatgaatcccatgtctacacacacaacaaaaac |
6577473 |
T |
|
| Q |
203 |
tatatatgaatgcatgtagaaacatattattcaactttcaagcacctaaaggagtagaaaagatacgatcaacttcagtttcgaacataaacggtgttgg |
302 |
Q |
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| T |
6577474 |
tatatatgaatgcatgtagaaacatatt---caactttcaagcacctaaaggagtagaaaagatacgatcaacttcagtttcaaacataaacggtgttgg |
6577570 |
T |
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| Q |
303 |
gcctttaattgaattatcactagtttctgtaggttggttttcttcaaaagctttttcaatatccttaggttcgtgtgagggccctcctggtagt |
396 |
Q |
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| T |
6577571 |
gcctttaattgaattatcactagtttctgtagcttggttttcttcaaaagctttttcaatatccttaggttcgtgtgagggccctcctggtagt |
6577664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 34243927 - 34243813
Alignment:
| Q |
242 |
aagcacctaaaggagtagaaaagatacgatcaacttcagtttcgaacataaacggtgttgggcctttaattgaattatcactagtttctgtaggttggtt |
341 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| | || |||| ||||||||||| || |
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| T |
34243927 |
aagcacctaatggcgtagaaaagatacgatcaacttcagtttcaaacataaatggtgtcgggccacgaattgaaccaacattagtctctgtaggttgatt |
34243828 |
T |
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| Q |
342 |
ttcttcaaaagcttt |
356 |
Q |
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|||||||||| |||| |
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| T |
34243827 |
ttcttcaaaaacttt |
34243813 |
T |
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