View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_43 (Length: 397)
Name: NF15465_low_43
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 32168814 - 32168433
Alignment:
| Q |
1 |
tttatattgtggaaaaatggagaaaaatgtagccaatgcgatcgaaattgcaaagacctagaaatcctttatatttgcggttgcagactgcaatttaaaa |
100 |
Q |
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| T |
32168814 |
tttatattgtggaaaaatggagaaaaatgtagccaatgcgatcgaaattgcaaagacctagaaatcctttatatttgcggttgcagactgcaatttaaaa |
32168715 |
T |
|
| Q |
101 |
ccatacttcttatctgatcaatgaagtaagaaactcgaaagcaacttcatcacaaggaatggtaaggcccatgtcatgattgaagccaaattcctcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32168714 |
ccatacttcttatctgatcaatgaagtaagaaactcgaaagcaacttcatcacaaggaatggtaaggcccatgtcatgattgaagccaaattcctcctca |
32168615 |
T |
|
| Q |
201 |
gctctttgaagcaatctttgaaattgtggatgaggcaaccatgaaattggaacaatatatcttgttctattttctccaacataaacaacaaaatgacctt |
300 |
Q |
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| T |
32168614 |
gctctttgaagcaatctttgaaattgtggatgaggcaaccatgaaattggaacaatatatcttgttctattttctccaacataaacaacaaaatgacctt |
32168515 |
T |
|
| Q |
301 |
ttggtacatcttcaggaagattctcttcattgtaaccatttttctttccaaaacttgaacatcttttaagaatttgcttgat |
382 |
Q |
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| T |
32168514 |
ttggtacatcttcaggaagactctcttcattgtaaccatttttctttccaaaacttgaacatcttttaagaatttgcttgat |
32168433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 143 - 382
Target Start/End: Original strand, 8510665 - 8510904
Alignment:
| Q |
143 |
aacttcatcacaaggaatggtaaggcccatgtcatgattgaagccaaattcctcctcagctctttgaagcaatctttgaaattgtggatgaggcaaccat |
242 |
Q |
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| T |
8510665 |
aacttcatcacaagggatagtaagtcccatatcatgattgaagccaaattcatcttcagctctttgtagcaaactttgaaattgaggatgtgccaaccaa |
8510764 |
T |
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| Q |
243 |
gaaattggaacaatatatcttgttctattttctccaacataaacaacaaaatgaccttttggtacatcttcaggaagattctcttcattgtaaccatttt |
342 |
Q |
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|||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| | |
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| T |
8510765 |
gaaattggaataatgtatcttgttctattctctccaacataaactacaaaatgaccttttggtacatcctcaggaagaccctcttcattgtaactctgcc |
8510864 |
T |
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| Q |
343 |
tctttccaaaacttgaacatcttttaagaatttgcttgat |
382 |
Q |
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| T |
8510865 |
ttttgccaaaacttgaacatcttttgacaatttgcttgat |
8510904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 310
Target Start/End: Original strand, 55072216 - 55072384
Alignment:
| Q |
142 |
caacttcatcacaaggaatggtaaggcccatgtcatgattgaagccaaattcctcctcagctctttgaagcaatctttgaaattgtggatgaggcaacca |
241 |
Q |
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||||||| | |||||||||||| || |||||||| |||| ||||||||||| || |||||| | |||| | | |||||||| || |||| || | |
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| T |
55072216 |
caacttcttgacaaggaatggtgagtcccatgtcgtgatcaaagccaaattcttcttcagcttgtcgaaggagtgactgaaattgagggtgagttaagaa |
55072315 |
T |
|
| Q |
242 |
tgaaattggaacaatatatcttgttctattttctccaacataaacaacaaaatgaccttttggtacatc |
310 |
Q |
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||| ||||| ||||||||||| |||| ||||| |||||||||||| |||||||||||||||| ||||| |
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| T |
55072316 |
tgagattggtacaatatatctgcttctgttttcaccaacataaacagcaaaatgaccttttgggacatc |
55072384 |
T |
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