View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_low_44 (Length: 393)
Name: NF15465_low_44
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_44 |
 | |
|
| [»] scaffold1439 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 22436490 - 22436853
Alignment:
| Q |
19 |
cagtgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22436490 |
cagtgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttgtggacaacatccactcaagttatggaa |
22436589 |
T |
|
| Q |
119 |
caccttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22436590 |
tgccttcttattgaacaattctaaagatttttcttcagttaaaccttgaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattc |
22436689 |
T |
|
| Q |
219 |
atgtttcttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatattaaagtaccatacatcgtcaaaca |
318 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
22436690 |
attttccttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatatttaagttccatacatcgtcaaaca |
22436789 |
T |
|
| Q |
319 |
cgacaaagtaccttttttgctgcaactgttttatcacttcatcaatcaacggctctccgttcat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22436790 |
cgacaaagtaccttttttgctgcaactgttttatcacttcatcaatcaacggctctccgttcat |
22436853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 22367786 - 22368099
Alignment:
| Q |
22 |
tgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaacac |
121 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | |
|
|
| T |
22367786 |
tgactacaattgcgagtggtaatccattgcatttttcaacaattttggaagatatatcaataagattttctggacaatatccgctcaagtcatggaacgc |
22367885 |
T |
|
| Q |
122 |
cttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||| ||||| ||| || |||||||| | | |
|
|
| T |
22367886 |
cttcttattgaacaattctaaagatttttcttcacttaaaccttcaagtttatgcacttcaacaaaagaagatttcttacaagcatctgcaacatcctcg |
22367985 |
T |
|
| Q |
222 |
tttcttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatattaaagtaccatacatcgtcaaacacga |
321 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||||||||||| || ||| ||||||||| |||||||| | |
|
|
| T |
22367986 |
tttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagaaaattcaatatcattccaaaaatgtgagtcccatacatcatcaaacacta |
22368085 |
T |
|
| Q |
322 |
caaagtaccttttt |
335 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
22368086 |
caacgtaccttttt |
22368099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 22431032 - 22431345
Alignment:
| Q |
22 |
tgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaacac |
121 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
22431032 |
tgactacaattgcgagtggtaatccattgcatttttcaacaattttggaagatatatctataagattttctggacaatatccgctcaagtcatggaacac |
22431131 |
T |
|
| Q |
122 |
cttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||| || | || ||| | || |
|
|
| T |
22431132 |
tttcttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaacaaaagaagatttcttacaagcatctacaccatccttg |
22431231 |
T |
|
| Q |
222 |
tttcttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatattaaagtaccatacatcgtcaaacacga |
321 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||| ||| | | ||||||||| |||||||| | |
|
|
| T |
22431232 |
tttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcataccaaaaatttgactcccatacatcatcaaacacta |
22431331 |
T |
|
| Q |
322 |
caaagtaccttttt |
335 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
22431332 |
caacgtaccttttt |
22431345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 22 - 363
Target Start/End: Original strand, 22357861 - 22358202
Alignment:
| Q |
22 |
tgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaacac |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||||| | |
|
|
| T |
22357861 |
tgactacaattgctagtggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacgtccatttaagtcatggaatgc |
22357960 |
T |
|
| Q |
122 |
cttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatg |
221 |
Q |
| |
|
||||||||||||||| || ||||||| |||| |||| |||||||| ||||||| |||||||||||||||||| ||||| ||| ||| ||||||| |||| |
|
|
| T |
22357961 |
cttcttattgaacaactcaaaagattgttctacagtcaaaccttttagttcatacacttcaacaaaagaagatttcttacaagtattcgcaacatccatg |
22358060 |
T |
|
| Q |
222 |
tttcttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatattaaagtaccatacatcgtcaaacacga |
321 |
Q |
| |
|
|||||||| |||||||||| | ||||||| ||| ||||||||||||||||||||||||||||| | ||| || | | ||||||||| |||||||| | |
|
|
| T |
22358061 |
tttcttgtagtgattaatatcctagaaccctttttgttatcaatcatagcaaattcaatatcatgcaaaaaatgtgactcccatacatcatcaaacacta |
22358160 |
T |
|
| Q |
322 |
caaagtaccttttttgctgcaactgttttatcacttcatcaa |
363 |
Q |
| |
|
||| |||||||||| ||||| | ||| |||||||||||| |
|
|
| T |
22358161 |
caacataccttttttcttgcaagtagtttctcacttcatcaa |
22358202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 22 - 363
Target Start/End: Original strand, 22442604 - 22442939
Alignment:
| Q |
22 |
tgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaacac |
121 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |||||||||||| |||||||| ||| | |||| ||| || | |
|
|
| T |
22442604 |
tgactacaattgctagtggtaatccattgcatttttcaacaattttggaagatataccaataagattttttggacaacgtccgtttaagtcatgaaatgc |
22442703 |
T |
|
| Q |
122 |
cttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatg |
221 |
Q |
| |
|
||||||||||||||| || ||||||| |||| |||| |||||||| ||||| ||| ||||||||||||| ||||| ||| ||||||||||| |||| |
|
|
| T |
22442704 |
cttcttattgaacaactccaaagattgttctacagtcaaaccttttagttc--gta----aacaaaagaagatttcttacaagtatttgcaacatccatg |
22442797 |
T |
|
| Q |
222 |
tttcttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatattaaagtaccatacatcgtcaaacacga |
321 |
Q |
| |
|
|||||||| |||||||||| | ||||||| ||| ||||||||||||||||||||||||||||| | ||| || | | ||||||||| |||||||| | |
|
|
| T |
22442798 |
tttcttgtagtgattaatatcctagaaccctttttgttatcaatcatagcaaattcaatatcatgcaaaaaatgtgactcccatacatcatcaaacacta |
22442897 |
T |
|
| Q |
322 |
caaagtaccttttttgctgcaactgttttatcacttcatcaa |
363 |
Q |
| |
|
||| |||||||||| ||||| | ||| |||||||||||| |
|
|
| T |
22442898 |
caacataccttttttcttgcaagtagtttctcacttcatcaa |
22442939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 22630299 - 22630566
Alignment:
| Q |
21 |
gtgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaaca |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
22630299 |
gtgactacaattgctagaggtaatcctttgcatttttcaacaattttggaagatatgtcaaaaagattttctggacaaaatccatccaagtcatggaacg |
22630398 |
T |
|
| Q |
121 |
ccttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcat |
220 |
Q |
| |
|
| ||||| || |||||||| ||||| | |||||||| ||||| || || ||||| |||| ||| ||||| ||||| ||| || |||||||| | | |
|
|
| T |
22630399 |
ctttctttttaaacaattccaaagactgttcttcagataaacgttccagctcatgcactttgccaa---aagatttcttacaagcatctgcaacatcctt |
22630495 |
T |
|
| Q |
221 |
gtttcttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaa |
291 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22630496 |
gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcataccaaa |
22630566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 26 - 343
Target Start/End: Original strand, 22458352 - 22458669
Alignment:
| Q |
26 |
tacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaacaccttc |
125 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| | |||| ||||| |||| |
|
|
| T |
22458352 |
tacaattgctagtggcaatccattgcatttttcaacaattttaaaagatatatcaataagattttctggacaacgtccgtttaagtcgtggaatgtcttc |
22458451 |
T |
|
| Q |
126 |
ttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatgtttc |
225 |
Q |
| |
|
||||||||||| || ||||||| || ||||| |||||||| | ||||| |||||||||||||||||| ||||| | | ||||||||||| |||||||| |
|
|
| T |
22458452 |
ttattgaacaactccaaagattgttgttcagccaaacctttcatttcatacacttcaacaaaagaagatttcttacatgcatttgcaacatccatgtttc |
22458551 |
T |
|
| Q |
226 |
ttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatattaaagtaccatacatcgtcaaacacgacaaa |
325 |
Q |
| |
|
||||||||||||||| |||| |||| ||| ||||||||||||||||||| ||||||| ||||| || ||| ||||||||| ||||| || | || |
|
|
| T |
22458552 |
ttgttgtgattaatatcttacaaccctttttattatcaatcatagcaaatttgatatcatcccaaaaatgtaagctccatacatcatcaaaaactataac |
22458651 |
T |
|
| Q |
326 |
gtaccttttttgctgcaa |
343 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
22458652 |
ataccttttttcctgcaa |
22458669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 26 - 343
Target Start/End: Original strand, 22481333 - 22481650
Alignment:
| Q |
26 |
tacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaacaccttc |
125 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| | |||| ||||| |||| |
|
|
| T |
22481333 |
tacaattgctagtggcaatccattgcatttttcaacaattttaaaagatatatcaataagattttctggacaacgtccgtttaagtcgtggaatgtcttc |
22481432 |
T |
|
| Q |
126 |
ttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatgtttc |
225 |
Q |
| |
|
||||||||||| || ||||||| || ||||| |||||||| | ||||| |||||||||||||||||| ||||| | | ||||||||||| |||||||| |
|
|
| T |
22481433 |
ttattgaacaactccaaagattgttgttcagccaaacctttcatttcatacacttcaacaaaagaagatttcttacatgcatttgcaacatccatgtttc |
22481532 |
T |
|
| Q |
226 |
ttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatattaaagtaccatacatcgtcaaacacgacaaa |
325 |
Q |
| |
|
||||||||||||||| |||| |||| ||| ||||||||||||||||||| ||||||| ||||| || ||| ||||||||| ||||| || | || |
|
|
| T |
22481533 |
ttgttgtgattaatatcttacaaccctttttattatcaatcatagcaaatttgatatcatcccaaaaatgtaagctccatacatcatcaaaaactataac |
22481632 |
T |
|
| Q |
326 |
gtaccttttttgctgcaa |
343 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
22481633 |
ataccttttttcctgcaa |
22481650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 22467809 - 22468076
Alignment:
| Q |
21 |
gtgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaaca |
120 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
22467809 |
gtgacaacaattgctagaggtaatcctttgcagttttcaacaattttggaagatatgtcaaaaagattttctggacaaactccgtccaagtcatggaacg |
22467908 |
T |
|
| Q |
121 |
ccttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcat |
220 |
Q |
| |
|
||||||| || |||||||| || || | |||||||| ||||| || || ||||| |||| | ||| ||||| ||||| ||| || ||||||| | | |
|
|
| T |
22467909 |
ccttctttttaaacaattccaaggactgttcttcagataaacgttccagctcatgcactttaccaa---aagatttcttacaagcatctgcaacaacctt |
22468005 |
T |
|
| Q |
221 |
gtttcttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaa |
291 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22468006 |
gtttctcgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcataccaaa |
22468076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 22353672 - 22353926
Alignment:
| Q |
22 |
tgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaacac |
121 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||| || |||||||| ||||||| |||| ||||| | ||||| | |
|
|
| T |
22353672 |
tgactacaattgcgagaggtaatcctttgcatttttcaataatttcggaagatatataaaaaagattttttggacaaaatccgtccaagtcacggaacgc |
22353771 |
T |
|
| Q |
122 |
cttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatg |
221 |
Q |
| |
|
|||||| || ||||| || ||||||| || ||||| ||||| || || ||||| |||| | | | ||||| ||||| || || || ||||| | || |
|
|
| T |
22353772 |
cttctttttaaacaaatccaaagattgtttttcagataaacgttccagctcatgcactttaccga---aagatttcttacaatcatctgtaacatccttg |
22353868 |
T |
|
| Q |
222 |
tttcttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaa |
279 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
22353869 |
tttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaa |
22353926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 22635365 - 22635624
Alignment:
| Q |
22 |
tgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagttatggaacac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| || || |||| ||||| | | |
|
|
| T |
22635365 |
tgactacaattgctagaggtaatcctttgcatttttcgacaattttggaagatatatcaataagatattcaggaaaaatgccgtccaagccatggagcgc |
22635464 |
T |
|
| Q |
122 |
cttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatg |
221 |
Q |
| |
|
|||||| |||||||| ||||||| || ||||| ||||| || || | ||| |||| | ||| ||||| | ||| ||| ||||||||||| | | |
|
|
| T |
22635465 |
cttctttagaaacaattccaaagattgtttttcagataaacgttccagattatgcactttaccaa---aagatttattacaagcatttgcaacatccttt |
22635561 |
T |
|
| Q |
222 |
tttcttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatca |
284 |
Q |
| |
|
||||||||||||||||||| | || ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
22635562 |
tttcttgttgtgattaatatcctacaactatttttgttatcaatcatagcaaattcaatatca |
22635624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 22620773 - 22620996
Alignment:
| Q |
25 |
ctacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagtta---tggaacac |
121 |
Q |
| |
|
||||||||||||| ||||| || ||||||||| || |||||| ||||||||||||||| |||| || |||||||| |||| |||| | | || || |
|
|
| T |
22620773 |
ctacaattgctagtggtaaacccttgcattttctagcaatttcggaagatatatcaattagatcttttggacaacttccatcaaagtcaaatcgaaatac |
22620872 |
T |
|
| Q |
122 |
cttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatg |
221 |
Q |
| |
|
||||||||||||||| || ||||||| ||| ||||||||| || |||||||| || |||| |||||||||| | ||| || || | ||||||| ||| |
|
|
| T |
22620873 |
cttcttattgaacaactcaaaagattgttcctcagttaaaggttgtagttcatgcacctcaataaaagaagattttttacaataaatagcaacatccata |
22620972 |
T |
|
| Q |
222 |
tttcttgttgtgattaatacctta |
245 |
Q |
| |
|
|||||||||| || |||| |||| |
|
|
| T |
22620973 |
cttcttgttgtaatcaatatctta |
22620996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 343
Target Start/End: Original strand, 22615132 - 22615448
Alignment:
| Q |
27 |
acaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccact--caagttatggaacacctt |
124 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| | ||||||||||||| || | || ||||||||| | | ||| || | || |||| |
|
|
| T |
22615132 |
acaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacatttgtcaaatt--gaaatgcctt |
22615229 |
T |
|
| Q |
125 |
cttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatgttt |
224 |
Q |
| |
|
|||||| ||||| || | ||||| ||||||||||||| || | ||||| |||| || || |||||||||||| ||||| |||||||| || || |
|
|
| T |
22615230 |
cttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgactaacgaagatctcttacaagaaagtgcaacatctatattc |
22615329 |
T |
|
| Q |
225 |
cttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatattaaagtaccatacatcgtcaaacacgacaa |
324 |
Q |
| |
|
|||||||| || |||| |||| |||||| |||||||| | |||| ||||||| |||||||||| || | || ||||||||| |||||||| |||| |
|
|
| T |
22615330 |
cttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacacaacaa |
22615429 |
T |
|
| Q |
325 |
agtaccttttttgctgcaa |
343 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
22615430 |
cgtacctcttttgctgcaa |
22615448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 22656927 - 22657148
Alignment:
| Q |
27 |
acaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacatccactcaagtta---tggaacacct |
123 |
Q |
| |
|
|||||||| || ||||| |||||||||||| || |||||| ||||||||||||||| || | || ||||||||||||| | |||| | || || ||| |
|
|
| T |
22656927 |
acaattgccagcggtaaacctttgcattttctagcaatttcggaagatatatcaatgagctcttttggacaacatccattaaagtcaaattgaaaggcct |
22657026 |
T |
|
| Q |
124 |
tcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctcttaaaagaatttgcaacattcatgtt |
223 |
Q |
| |
|
||||||| ||||| || ||||||| |||| | |||||| | |||||||| ||||||| |||||||||| ||||| || | ||||||| ||| || |
|
|
| T |
22657027 |
tcttattaaacaactcaaaagattgttctactgttaaaggatgtagttcatgcacttcaataaaagaagatttcttacaatacaccgcaacatccatatt |
22657126 |
T |
|
| Q |
224 |
tcttgttgtgattaatacctta |
245 |
Q |
| |
|
||||||||| || |||| |||| |
|
|
| T |
22657127 |
tcttgttgtaataaatatctta |
22657148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 362
Target Start/End: Complemental strand, 22115503 - 22115352
Alignment:
| Q |
211 |
caacattcatgtttcttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatattaaagtaccatacatc |
310 |
Q |
| |
|
|||||| ||||||||||||||| || |||| |||| |||||| ||||||| | || |||||||||||||| ||||| || | | ||| ||||| |
|
|
| T |
22115503 |
caacatccatgtttcttgttgttataaatatcttacttccatttttactatcaattacagaaaattcaatatcatcccaaaaatgtacattccaaacatc |
22115404 |
T |
|
| Q |
311 |
gtcaaacacgacaaagtaccttttttgctgcaactgttttatcacttcatca |
362 |
Q |
| |
|
||||||||||||| |||||| |||| |||||| | |||| ||||||||||| |
|
|
| T |
22115403 |
atcaaacacgacaacgtacctctttttctgcaagtattttctcacttcatca |
22115352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1439
Description:
Target: scaffold1439; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 1551 - 1630
Alignment:
| Q |
121 |
ccttcttattgaacaattctaaagatttttcttcagttaaacctttaagttcatgtacttcaacaaaagaagatctctta |
200 |
Q |
| |
|
|||||||||| ||||| || || |||||||||||||||||| || |||||||| ||||||| |||||||||| ||||| |
|
|
| T |
1551 |
ccttcttattaaacaaatcaaatgatttttcttcagttaaaggttgtagttcatgcacttcaataaaagaagatttctta |
1630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 29610701 - 29610765
Alignment:
| Q |
297 |
aagtaccatacatcgtcaaacacgacaaagtaccttttttgctgcaactgttttatcacttcatc |
361 |
Q |
| |
|
|||| |||||||||||||||||| |||| ||||||||| | |||||| | ||| |||||||||| |
|
|
| T |
29610701 |
aagttccatacatcgtcaaacactacaaggtaccttttctcctgcaagtaatttctcacttcatc |
29610765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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