View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_45 (Length: 392)
Name: NF15465_low_45
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_45 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 3 - 392
Target Start/End: Original strand, 42073654 - 42074043
Alignment:
| Q |
3 |
gagtatttggaaggttactgtgaagagttgaagaaagcgttgaaacaagcaatgcaagcaaaagaatctccactttgtgatgagaaacttggaataccat |
102 |
Q |
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| T |
42073654 |
gagtatttggaaggttactgtgaagagttgaagaaagcgttgaaacaagcaatgcaagcaaaagaatctccactttgtgatgagaaacttggaataccat |
42073753 |
T |
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| Q |
103 |
ttgatggaaatggagaaaatttgatgatgcctgtgaatgaagatgtaatggtagaagggtttttgcagatagtctcagaatcaagattatcagtgaaaca |
202 |
Q |
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| T |
42073754 |
ttgatggaaatggagaaaatttgatgatgcctgtgaatgaagatgtaatggtagaagggtttttgcagatagtctcagaatcaagattatcagtgaaaca |
42073853 |
T |
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| Q |
203 |
attttgcaagacccttataagccaaattgaagaaaatgatcaaactttgatagaaaacttgaacttgcttcttcaaccatataagctctctttggattcc |
302 |
Q |
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| T |
42073854 |
attttgcaagacccttataagccaaattgaagaaaatgatcaaactttgatagaaaacttgaacttgcttcttcaaccatataagctctctttggattcc |
42073953 |
T |
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| Q |
303 |
aaatactcaaaagcagttctttatcattttgaagcattcataaacaattctctctaccaagactttgagaattgtgtgttccaaaagaac |
392 |
Q |
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| T |
42073954 |
aaatactcaaaagcagttctttaccattttgaagcattcataaacaattctctctaccaagactttgagaattgtgtgttccaaaagaac |
42074043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 129 - 376
Target Start/End: Original strand, 24876764 - 24877011
Alignment:
| Q |
129 |
atgcctgtgaatgaagatgtaatggtagaagggtttttgcagatagtctcagaatcaagattatcagtgaaacaattttgcaagacccttataagccaaa |
228 |
Q |
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| T |
24876764 |
atgcctgtgaacgaggaagtaatgatagagggattcttgcagatagtatcggagtcaagattatcagtgaagcagttctgtaagaaccttataaacaaca |
24876863 |
T |
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| Q |
229 |
ttgaagaaaatgatcaaactttgatagaaaacttgaacttgcttcttcaaccatataagctctctttggattccaaatactcaaaagcagttctttatca |
328 |
Q |
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| T |
24876864 |
ttgaagaaactgatcactcattgatagaaaatttgaactcgcttcttcaaccgtataagctgtctctaaattccaagtactcaaaggcagttctgtatca |
24876963 |
T |
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| Q |
329 |
ttttgaagcattcataaacaattctctctaccaagactttgagaattg |
376 |
Q |
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| T |
24876964 |
ttttgaagctttcataaatcaggctctctaccaagactttgagaattg |
24877011 |
T |
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