View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_48 (Length: 391)
Name: NF15465_low_48
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 40856384 - 40856007
Alignment:
| Q |
1 |
acagaaccaaaaaaccaaatacagcacaaaaaca--aggctcatacataagcttagccagagactaaaatattcatactcataaacttcacagtattata |
98 |
Q |
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| T |
40856384 |
acagaaccaaaaaaccaaatacagcacaaaaacagaaggctcatacataagcttagccagagactaaaatattcatactcataaacttcacagtattata |
40856285 |
T |
|
| Q |
99 |
acaacttgtgaaacaaccagatgaagaactattttgttaacaaatgaaagaccttcataaagctaacacgtgtgtcttttc-aagttgaaataaaggtat |
197 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40856284 |
acaacttgtgaaacaaccagatgaagaactattctgttaacaaatgaaagaccttcataaagctaacacgtgtgtcttttcgaagttgaaataaaggtat |
40856185 |
T |
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| Q |
198 |
ttcgtaaaagggaatatagaaaacagtacctcggagaaattgaatgtggaagaggcggcggcgaggtggtggatcacgcggaggcgcgtgcagtgtgaag |
297 |
Q |
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| T |
40856184 |
ttcgtaaaagggaatatagaaaacagtacctcggagaaattgaatgtggaataggcggcggcgaggtggtggatcacgcggaggcgcgtgcagtgtgaag |
40856085 |
T |
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| Q |
298 |
gccgcgaaggtggaattttgaagacaaggcaaaagcaacggcttgaaaacaaagatgccactgaactgtgtgtaagag |
375 |
Q |
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| T |
40856084 |
accgcgaaggtggaattttgaagacaaggcaaaagcaacggcttgaaaacaaagatgccactgaactgtgtgtaagag |
40856007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 50970586 - 50970634
Alignment:
| Q |
64 |
aaaatattcatactcataaacttcacagtattataacaacttgtgaaacaac |
115 |
Q |
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||||| ||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
50970586 |
aaaatgttcatactcataaacttcatagtattat---aacttgtgaaacaac |
50970634 |
T |
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