View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_52 (Length: 375)
Name: NF15465_low_52
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 52272202 - 52272547
Alignment:
| Q |
12 |
caaaggaagaaacatctaaaaacttacatatcatcatcaacaggagcagaatcaagtttcaagttcattgaaagcatagatggggcaaacacttcttcgg |
111 |
Q |
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| T |
52272202 |
caaaggaagaaacatctaaaaacttacatatcatcatcaacaggagcagaatcaagtttcaagttcattgaaagcatagatggggcaaacacttcttcgg |
52272301 |
T |
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| Q |
112 |
aaggcttattcaacttcccatttagggcctcttctttaatatcatttatttcagaatcagaaaagagatcctagaaatcaaagacaaataagcacttgat |
211 |
Q |
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| T |
52272302 |
aaggcttattcaacttcccatttagggcctcttctttaatatcatttatttcagaatcagaaaagagatcctagaaatcaaagacaaataagcacttggt |
52272401 |
T |
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| Q |
212 |
gaacaaaatctacatttttaagaaagcagctgaataaatgggtgacagaatacctgggtatcatcaacgggagctcgaaatgcatgtatagtttctgaaa |
311 |
Q |
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| T |
52272402 |
gaacaaaatctacatttttaagaaagcgtctgaataaatgggtgacagaatacctgggtatcatcaacgggagctcgaaatgcatgtatagtttctgaaa |
52272501 |
T |
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| Q |
312 |
ccacatcctgaaactcatcataagcaatgatttagatagcaatatt |
357 |
Q |
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| T |
52272502 |
ccacatcctgaaactcatcataagcaatgatttagatagcaatatt |
52272547 |
T |
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