View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_53 (Length: 366)
Name: NF15465_low_53
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 33 - 275
Target Start/End: Complemental strand, 11794988 - 11794743
Alignment:
| Q |
33 |
atttttcaatgtatttgagagtgattttgtgtggcagaattatttgttgttttcggtcacgatcattagcatcattgggaaatcttttaaagacccatag |
132 |
Q |
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| T |
11794988 |
atttttcaatgtatttgagagtgattttgtttggcagaattatttgttgttttcggtcacgatcattagcatcactgggaaatcttttaaagacccatag |
11794889 |
T |
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| Q |
133 |
gggtcacagtatcttcaa----nnnnnnnnnnnnatatagaaatacnnnnnnnnatatagaaaattagtaaaatttacttcatgcaattttattttacgc |
228 |
Q |
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| T |
11794888 |
gggtcacagtatcttcaatttttttatttatcttatatataaatatttttttatatatagaaaattagtaaaatttacttcatacaattttattttacgc |
11794789 |
T |
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| Q |
229 |
acatctctctagcaccccctccattcacacatgcaaacagttagtat |
275 |
Q |
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| T |
11794788 |
acatctctctagta-cccctcgattcacacatgcaaacatttagtat |
11794743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 11794675 - 11794605
Alignment:
| Q |
296 |
tatctagttgatagatagtctatttggaactttaattttgtattgaaattattcatgtaatataagtataa |
366 |
Q |
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| T |
11794675 |
tatctagttgatagatagtctatttggagctttaattttgtgttgaaattattcatgtaatataagtataa |
11794605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 35030648 - 35030597
Alignment:
| Q |
278 |
tctaagcatatgataggctatctagttgatagatagtctatttggaactttaa |
330 |
Q |
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| T |
35030648 |
tctaagcctaggataggctatatagttgatagatagt-aatttggaactttaa |
35030597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 24214180 - 24214227
Alignment:
| Q |
289 |
gataggctatctagttgatagatagtctatttggaactttaattttgt |
336 |
Q |
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| T |
24214180 |
gataggctatctagttggtagatagtatatttggagctttaattttgt |
24214227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 334
Target Start/End: Complemental strand, 34649563 - 34649406
Alignment:
| Q |
183 |
atatagaaaattagtaaaatttacttcatgcaattttattttacgcac-atctctctagcaccccctccattcacacatgcaaacag-----ttagtatt |
276 |
Q |
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||||||||||||| |||||| ||| || |||||||||||||| ||| ||||||| | ||| ||||||||||||||||| | || || ||| |
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| T |
34649563 |
atatagaaaattactaaaatactcttgatacaattttattttacacaccatctctccggtaccgcctccattcacacatgcgagtaggctcattttaatt |
34649464 |
T |
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| Q |
277 |
ctctaagcatatgataggctatctagttgatagatagtctatttggaactttaatttt |
334 |
Q |
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|||||| ||| |||| |||||||||||| |||||||| |||||||| ||| |||||| |
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| T |
34649463 |
ttctaaggataggataagctatctagttggtagatagtatatttggagcttcaatttt |
34649406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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