View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_54 (Length: 365)

Name: NF15465_low_54
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_54
NF15465_low_54
[»] chr3 (13 HSPs)
chr3 (18-361)||(2495589-2495935)
chr3 (142-299)||(2446957-2447114)
chr3 (64-336)||(2634063-2634334)
chr3 (58-365)||(675005-675312)
chr3 (188-365)||(749601-749780)
chr3 (151-316)||(2504120-2504284)
chr3 (246-358)||(9564361-9564474)
chr3 (131-316)||(7331821-7332007)
chr3 (272-365)||(2485428-2485521)
chr3 (327-365)||(2447114-2447152)
chr3 (216-316)||(2641572-2641674)
chr3 (216-316)||(2649065-2649167)
chr3 (18-127)||(2485282-2485386)
[»] scaffold0019 (1 HSPs)
scaffold0019 (58-365)||(2297-2603)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 2495589 - 2495935
Alignment:
Q  18 taaagttgttttgctgctaagatatttggtcatcatgtttttgtgcaaatgatattattgaattctttcacgcacgcgatagtatacaattccatagcat 117  Q
    ||||||||||||||||||||||||| ||||||||   || |||||||||||||||||||||||||||  | ||| || | |||  |||||||||||||||    
T  2495589 taaagttgttttgctgctaagatatatggtcatctcattgttgtgcaaatgatattattgaattcttaaatgcatgcaacagtgcacaattccatagcat 2495688  T
Q  118 tggtgaaatggtctgaatattattgatttagtgtctgagattgtaacaaagttcatttccatatgcgcgt--ttgccttataatgtctcgatatttttac 215  Q
    |||||||||   |||||||| |||||| ||||||||||||||||||  ||||||||||||||||| | ||  ||||||||||||||||| |||||||||     
T  2495689 tggtgaaatttcctgaatatgattgatatagtgtctgagattgtaaggaagttcatttccatatgtgtgtgtttgccttataatgtctcaatatttttat 2495788  T
Q  216 tttagttgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctc-ttttcaggttggttgtgtttgtttgtttcaatagaagggttat 314  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  |||||||||||||||||     
T  2495789 tttaattgcacctgaagcctcaaaatagacttataacatcatagttgaaatgtctctttttcaggttggttgtgtttgttcctttcaatagaagggttac 2495888  T
Q  315 tcggtggctggctgaattgcttaggttcattttatggtctggagctt 361  Q
    ||| |||||||||||||| ||||||||  |||| |||||||||||||    
T  2495889 tcgctggctggctgaattccttaggtttgttttgtggtctggagctt 2495935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 2446957 - 2447114
Alignment:
Q  142 gatttagtgtctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaat 241  Q
    |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2446957 gattgagtgtctgagattgtaacaaagttcatttccatatgcatgtttgccttataatgtcacgatatttttactttagttgcacctgaagcctcaaaat 2447056  T
Q  242 agacttataacatcatagttgaaatgcctcttttcaggttggttgtgtttgtttgttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2447057 agacttataacatcatagttgaaatgcctcttttcaggttggttgtgtttgtttgttt 2447114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 64 - 336
Target Start/End: Original strand, 2634063 - 2634334
Alignment:
Q  64 aaatgatattattgaattctttcacgcacgcgatag--tatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctgagattgt 161  Q
    ||||||||||||||||||||| || |||||  | |   | |||||||| ||| |||||||||||||  |||||||| |||||| || | |||||||||||    
T  2634063 aaatgatattattgaattcttacatgcacgtcacacattgtacaattc-ataacattggtgaaatgacctgaatataattgatataatttctgagattgt 2634161  T
Q  162 aacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagacttataacatcatagtt 261  Q
    |   ||||||||||||||||| |   ||||||||||||||||| ||||||| | |||  |||||||| ||||||||||||||||||||||||||||||||    
T  2634162 attgaagttcatttccatatgtg---ttgccttataatgtctcaatattttaatttttattgcacctcaagcctcaaaatagacttataacatcatagtt 2634258  T
Q  262 gaaatgcctc-ttttcaggttggttgtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgctt 336  Q
     ||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||  |  |||||||||||||||    
T  2634259 caaatgtctctttttcaggctggttgtgtttgttcgtttcaatagaagggttattctctatctggctgaattgctt 2634334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 365
Target Start/End: Complemental strand, 675312 - 675005
Alignment:
Q  58 ttgtgcaaatgatattattgaattctttcacgcacgcgatag--tatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctga 155  Q
    ||||| ||||||||||||||||||||| ||| ||||  | |   | |||||||| ||| |||||||||||||   || |||| |||||| ||||| ||||    
T  675312 ttgtgaaaatgatattattgaattcttacacacacgtaacacattgtacaattc-ataacattggtgaaatgacgtggatatgattgatatagtgcctga 675214  T
Q  156 gattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagt-tgcacctgaagcctcaaaatagacttataacat 254  Q
    |||||||   || ||  |||||| ||| |   |||||||||| |||||| ||||||| | ||| || ||||||| |||| |||||||||||||||||| |    
T  675213 gattgtagtgaattttgtttccacatgtg---ttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataactt 675117  T
Q  255 catagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgcttaggttcattttatggtc 353  Q
    | ||||||||||| ||||||| ||||||||| |||||||||  ||||||||||||||| ||||  | ||||||| ||||||||||||||||||| |||||    
T  675116 cgtagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtc 675017  T
Q  354 tggagctttgct 365  Q
    |||||| |||||    
T  675016 tggagcgttgct 675005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 188 - 365
Target Start/End: Complemental strand, 749780 - 749601
Alignment:
Q  188 ttgccttataatgtctcgatatttttactttagt-tgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctctttt-caggttggtt 285  Q
    |||||||||| |||||| ||||||| | ||| || ||||||| |||| |||||||||||||||||| || ||||||||||| ||||||| |||||||||     
T  749780 ttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggttggtc 749681  T
Q  286 gtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgct 365  Q
    |||||||||  ||||||||||||||| ||||  | ||||||| ||||||||||||||||||| ||||||||||| |||||    
T  749680 gtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgct 749601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 151 - 316
Target Start/End: Original strand, 2504120 - 2504284
Alignment:
Q  151 tctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagactt-at 249  Q
    |||||||||||| | |||||| |||| ||||| | ||| ||||||||||||||| ||||||| | ||||| ||||||| ||||||||||||| |||| ||    
T  2504120 tctgagattgtagcgaagttcctttcaatatgtgtgtt-gccttataatgtctcaatattttaattttaggtgcaccttaagcctcaaaatacactttat 2504218  T
Q  250 aacatcatagttgaaatgcctcttttcaggttggttgtgtttgtttgtttcaatagaagggttattc 316  Q
    |||||  ||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  2504219 aacatattagttgaaatgtctcttt-caggttggctgtgtttgtttgtttcaatagaagggttattc 2504284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 9564474 - 9564361
Alignment:
Q  246 ttataacatcatagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgcttaggttcat 344  Q
    ||||||| |||||||||||||| ||||||| ||||||||| |||||||||  ||||| ||||||||||||||  | ||||||||||||||||||||||||    
T  9564474 ttataacgtcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcattagaagggttattcactagctggctgaattgcttaggttcat 9564375  T
Q  345 tttatggtctggag 358  Q
    ||| ||||||||||    
T  9564374 tttgtggtctggag 9564361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 131 - 316
Target Start/End: Complemental strand, 7332007 - 7331821
Alignment:
Q  131 tgaatattattgatttagtgtctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctga 230  Q
    ||||||| |||||| |||||||||||||||||   |||||| |||||||||| | ||| | ||||| ||||||| ||||| | | |||| |||||||| |    
T  7332007 tgaatatgattgatatagtgtctgagattgtagtgaagttcctttccatatgtgtgtt-gtcttatgatgtctcaatattataattttaattgcacctta 7331909  T
Q  231 agcctcaaaatagact-tataacatcatagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggttattc 316  Q
    |||||| |||||  |  |||||| | ||||||| |||| ||||||| |||||||| |||||||||||||||||||||||  |||||||    
T  7331908 agcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaatagttattc 7331821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 2485428 - 2485521
Alignment:
Q  272 ttttcaggttggttgtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgct 365  Q
    ||||||||||| ||||||||||| |||||| | |||||||||||||  |||||||||| ||||||| ||||||||| ||||||||||| |||||    
T  2485428 ttttcaggttgattgtgtttgttcgtttcagttgaagggttattcgcaggctggctgagttgcttatgttcattttgtggtctggagccttgct 2485521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 2447114 - 2447152
Alignment:
Q  327 tgaattgcttaggttcattttatggtctggagctttgct 365  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2447114 tgaattgcttaggttcattttatggtctggagctttgct 2447152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 2641674 - 2641572
Alignment:
Q  216 tttagttgcacctgaagcctcaaaatagac-ttataacatcatagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggtta 313  Q
    |||| |||||||| |||||||||| ||  | |||| || | ||||||| |||| ||||||| |||||||| ||||||||||||||||||| |||||||||    
T  2641674 tttaattgcaccttaagcctcaaagtactccttatgacgtaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggtta 2641575  T
Q  314 ttc 316  Q
    |||    
T  2641574 ttc 2641572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 2649167 - 2649065
Alignment:
Q  216 tttagttgcacctgaagcctcaaaatagac-ttataacatcatagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggtta 313  Q
    |||| |||||||| |||||||||| ||  | |||| || | ||||||| |||| ||||||| |||||||| ||||||||||||||||||| |||||||||    
T  2649167 tttaattgcaccttaagcctcaaagtactccttatgacgtaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggtta 2649068  T
Q  314 ttc 316  Q
    |||    
T  2649067 ttc 2649065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 2485282 - 2485386
Alignment:
Q  18 taaagttgttttgctgctaagatatttggtcatcatgtttttgtgcaaatgatattattgaattctttcacgcacgcgatagtatacaattccatagcat 117  Q
    ||||||||||||||||||||||||| ||      || || ||||| ||||||||||||||||||| |  |||||| |   ||| |||||||||||||||     
T  2485282 taaagttgttttgctgctaagatatatgt-----atattgttgtgtaaatgatattattgaattcctagacgcacacatcagtgtacaattccatagcaa 2485376  T
Q  118 tggtgaaatg 127  Q
    ||||||||||    
T  2485377 tggtgaaatg 2485386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 58 - 365
Target Start/End: Original strand, 2297 - 2603
Alignment:
Q  58 ttgtgcaaatgatattattgaattctttcacgcacgcgata--gtatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctga 155  Q
    ||||| ||||||||||||||||||||| ||| || || | |  || |||||||| ||| ||||||| |||||  |||||||| ||||||||| ||||| |    
T  2297 ttgtgtaaatgatattattgaattcttacacacatgcaacacagtgtacaattc-ataacattggtaaaatgacctgaatataattgatttattgtctta 2395  T
Q  156 gattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagacttataacatc 255  Q
    |||| ||   ||||||||||||||||  |   |||||||| |||||||| ||||||| |  ||  |||||||| || |||||||||||||||||||| ||    
T  2396 gattatagtgaagttcatttccatatatg---ttgccttacaatgtctcaatattttaatatttattgcacctcaatcctcaaaatagacttataacgtc 2492  T
Q  256 atagttgaaatgcctctttt-caggttggttgtgtttgtttgtttcaatagaagggttattcggtggctggctgaattgcttaggttcattttatggtct 354  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||  | ||||||||||||||||||||||||||   |||||    
T  2493 atagttgaaatgtctctttttcaggttggttgtgtttgttcgtttcaatagaagggttattctctagctggctgaattgcttaggttcatttgtgggtct 2592  T
Q  355 ggagctttgct 365  Q
    ||||| |||||    
T  2593 ggagcgttgct 2603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University