View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_58 (Length: 349)
Name: NF15465_low_58
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 3 - 333
Target Start/End: Complemental strand, 823177 - 822848
Alignment:
| Q |
3 |
gagagagaagaataacttatacatggacaatttatacacaacgcggccattcgttatattttcgtgaaaatatactattcgctatatttagcatttttct |
102 |
Q |
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| T |
823177 |
gagagagataaataacttatacatggacaatttatacacaacgcggccattcgttatattttcgtgaaaatatactattcgctatatttagcatttttct |
823078 |
T |
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| Q |
103 |
ataccatcatttcccttgatttaattccaaaattttatattatttaacacaaagagctttatcagaaccatgatttccatccaattttgggaggaatgga |
202 |
Q |
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| T |
823077 |
ataccatcatttcccttgatttaattccaaaattttatattatttaacacaaagagctttatcagaaccatgatttccatccaa-tttgggaggaatgga |
822979 |
T |
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| Q |
203 |
tgaaatcaacttttaatttcttcttcattcattattaaaatactgttttaccccatccttgtgacctttccagttatcttttatatttcattatttctca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
822978 |
tgaaatcaacttttaatttcttcttcattcattattaaaatactgttttaccccatccttgtgacctttccagttatcttttatatttcattatttctca |
822879 |
T |
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| Q |
303 |
attcttcatttgcatgtttttcgtcttcgtg |
333 |
Q |
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| T |
822878 |
attcttcatttgcatgtttttcgtcttcgtg |
822848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 9412980 - 9413074
Alignment:
| Q |
3 |
gagagagaagaataacttatacatggacaatttatacacaacgcggccattcgttatattttcgtgaaaatatactattcgctatatttagcatttt |
99 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |
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| T |
9412980 |
gagagagagaaataacttatacatggacaatttatacacaacgcggccattcgttatattttcgtgaaa--atagtattcgctacatttagcatttt |
9413074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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