View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_60 (Length: 346)

Name: NF15465_low_60
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_60
NF15465_low_60
[»] chr6 (3 HSPs)
chr6 (45-282)||(34353323-34353565)
chr6 (309-346)||(1682586-1682623)
chr6 (306-346)||(33629644-33629684)
[»] chr8 (1 HSPs)
chr8 (306-346)||(19385264-19385304)
[»] chr4 (2 HSPs)
chr4 (306-346)||(3130533-3130573)
chr4 (306-346)||(47540471-47540511)
[»] chr3 (3 HSPs)
chr3 (306-346)||(32004526-32004566)
chr3 (306-346)||(49732487-49732527)
chr3 (307-346)||(13448025-13448064)
[»] chr1 (5 HSPs)
chr1 (306-346)||(14366178-14366218)
chr1 (306-346)||(21527707-21527747)
chr1 (306-346)||(52336208-52336248)
chr1 (307-346)||(48266273-48266312)
chr1 (306-346)||(4644558-4644599)
[»] chr7 (1 HSPs)
chr7 (306-346)||(9546283-9546323)
[»] chr5 (1 HSPs)
chr5 (306-346)||(10487460-10487500)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 45 - 282
Target Start/End: Complemental strand, 34353565 - 34353323
Alignment:
Q  45 tgaaacgttccttaaaatagtatttttt--gtgttaataaaataagatatttttgaagaattaaagacccaaatgagtcaggtcacttacaaaggagagc 142  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34353565 tgaaacgttccttaaaatagtattttttttgtgttaataaaataagatatttttgaagaattaaagacccaaatgagtcaggtcacttacaaaggagagc 34353466  T
Q  143 acacaaaaatacgggacttccaaaatccaaatcattggtaatttcttatc---cctacatttatttcctcattttgggttgcatgtttggcaatacaatg 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  34353465 acacaaaaatacgggacttccaaaatccaaatcattggtaatttcttatcgatcctacatttatttcctcattttgggttgcatgtttggcaatacaatg 34353366  T
Q  240 ggtcatttggtgacccacctatatggaatgacaaaaatcaact 282  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34353365 ggtcatttggtgacccacctatatggaatgacaaaaatcaact 34353323  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 1682623 - 1682586
Alignment:
Q  309 atgtagctctgttggattggttgttttgttgtaactct 346  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1682623 atgtagctctgttggattggttgttttgttgtaactct 1682586  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 33629684 - 33629644
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  33629684 ctgatgtagctctgttgggttggttgttttgttgtaactct 33629644  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 19385264 - 19385304
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  19385264 ctgatgtagctctgttgggttggttgttttgttgtaactct 19385304  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 3130533 - 3130573
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  3130533 ctgatgtagctctgttgggttggttgttttgttgtaactct 3130573  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 47540511 - 47540471
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  47540511 ctgatgtaactctgttgggttggttgttttgttgtaactct 47540471  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 32004566 - 32004526
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  32004566 ctgatgtagctctgttgggttggttgttttgttgtaactct 32004526  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 49732487 - 49732527
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  49732487 ctgatgtagctctgttgggttggttgttttgttgtaactct 49732527  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 13448064 - 13448025
Alignment:
Q  307 tgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  13448064 tgatgtagctctgttgggttggttgttttattgtaactct 13448025  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 14366178 - 14366218
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  14366178 ctgatgtagctctgttgggttggttgttttgttgtaactct 14366218  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 21527747 - 21527707
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  21527747 ctgatgtagctctgttgggttgtttgttttgttgtaactct 21527707  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 52336248 - 52336208
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  52336248 ctgatgtagctctgttgggttggttgttttgttgcaactct 52336208  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 48266273 - 48266312
Alignment:
Q  307 tgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  48266273 tgatgtagctctgttgtgttggttgttttgttgtaactct 48266312  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 4644599 - 4644558
Alignment:
Q  306 ctgatgtagctctgttggattggttg-ttttgttgtaactct 346  Q
    |||||||||||||||||| ||||||| |||||||||||||||    
T  4644599 ctgatgtagctctgttgggttggttgtttttgttgtaactct 4644558  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 9546323 - 9546283
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  9546323 ctgatgtagctctgttgggttgtttgttttgttgtaactct 9546283  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 10487460 - 10487500
Alignment:
Q  306 ctgatgtagctctgttggattggttgttttgttgtaactct 346  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  10487460 ctgatgtagctctgttgggttgtttgttttgttgtaactct 10487500  T

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