View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_62 (Length: 344)
Name: NF15465_low_62
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 50177601 - 50177915
Alignment:
| Q |
18 |
ggattcatagttgatagttcaacatcctgctgcaactgcaagagaaatgatggctaagttattgcaatacaatgataaataataataaaatatccttatg |
117 |
Q |
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| T |
50177601 |
ggattcatagttgatagttcaacatcctgctgcaactgcaagataaatgatggctaagttattgcaatacaatgattaataataataaaatttccttatg |
50177700 |
T |
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| Q |
118 |
cgttattttttcctttatacttggttgttgttgttctaatatgttttgtttgcaagatcaatcactg------ttctacttctacatgacatttttataa |
211 |
Q |
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| T |
50177701 |
cgttattttttcctttatacttggttgttgttgttctaatatgttttgtttgcaagatcaatcactgttctacttctacttctacatgacatttttataa |
50177800 |
T |
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| Q |
212 |
aatgaaaaataactatataaagnnnnnnnnaagcaaaaatagagtgcactgcacatacatcatatgacagaaaaggaaggcatccaactaagttgacaca |
311 |
Q |
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| T |
50177801 |
aatgaaaaataactatat--agttttttttaagcaaaaatagag-----tgcacatacatcatatgacagaaaaggaaggcatccaactaagttgacaca |
50177893 |
T |
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| Q |
312 |
tccaaaccaccacaccacctat |
333 |
Q |
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| T |
50177894 |
tccaaaccaccacaccacctat |
50177915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 54321866 - 54321804
Alignment:
| Q |
20 |
attcatagttgatagttcaacatcctgctgcaactgcaagagaaatgatggctaagttattgcaat |
85 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||| |
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| T |
54321866 |
attcatagttgatagttcaacattctgc---aactgcaagagaaataatggctaagatattgcaat |
54321804 |
T |
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