View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_64 (Length: 339)

Name: NF15465_low_64
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_64
NF15465_low_64
[»] chr3 (4 HSPs)
chr3 (18-330)||(54141839-54142160)
chr3 (23-253)||(53286991-53287229)
chr3 (70-261)||(52806432-52806640)
chr3 (279-330)||(53288024-53288075)
[»] chr6 (2 HSPs)
chr6 (18-253)||(11842510-11842753)
chr6 (279-330)||(11841738-11841789)
[»] chr1 (9 HSPs)
chr1 (22-138)||(23735575-23735687)
chr1 (22-138)||(23618604-23618717)
chr1 (70-138)||(23649950-23650018)
chr1 (184-261)||(23618484-23618562)
chr1 (184-261)||(23735455-23735533)
chr1 (193-233)||(23626871-23626911)
chr1 (184-261)||(23649830-23649908)
chr1 (22-112)||(23626785-23626871)
chr1 (22-112)||(23708511-23708597)
[»] chr4 (1 HSPs)
chr4 (225-258)||(46021246-46021279)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 54141839 - 54142160
Alignment:
Q  18 actagccagcaaccgagtgtctccccaatggtcatcgaagtacaaatgcaatcaaataggtaactcaaatcatcactttttaatttcaaccaattgtatg 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54141839 actagccagcaaccgagtgtctccccaatggttatcgaagtacaaatgcaatcaaataggtaactcaaatcatctctttttaatttcaaccaattgtatg 54141938  T
Q  118 tatgtttttattctagattgtaattgtttaagattaggcaacttaaagtgaaagtaagtttgctca---------atgttgaactattaatatactgtat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||| ||||    
T  54141939 tatgtttttattctagattgtaattgtttaagattaggcaacttaaagtgaaagtaagtttgctcaatgttgtccatgttgaactattaatataccgtat 54142038  T
Q  209 tttctgcagttggttgaattaatttgggttaacatgcactccatccatctttctttatcatgttgaactatcgattcgtacaagaatttgttctagttct 308  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54142039 tttctgtagttggttgaattaatttgggttaacatgcactccatccatctttctttatcatgttgaactatcgattcgtacaagaatttgttctagttct 54142138  T
Q  309 ctttctgtatcattgcctttgc 330  Q
    ||||||||||||||||||||||    
T  54142139 ctttctgtatcattgcctttgc 54142160  T

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Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 53286991 - 53287229
Alignment:
Q  23 ccagcaaccgagtgtctccccaatggtcatcgaagtacaaatgcaatcaaataggtaactcaaatcatcactttttaatttcaaccaattgtatgtatgt 122  Q
    |||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  53286991 ccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgt 53287090  T
Q  123 ttttattctagattgtaa-------ttgtttaagattaggcaactt-aaagtgaaagtaagtttgctcaatgttgaactattaatatactgtattttctg 214  Q
    |||||||||||||| ||        ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53287091 ttttattctagattctatattgtctttgtttaagattaggcaactttaaagtgaaagtaagtttgctcaatgttgaactattaatatactgtattttctg 53287190  T
Q  215 cagttggttgaattaatttgggttaacatgcactccatc 253  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  53287191 cagttggttgaattattttgggttaacatgcactccatc 53287229  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 261
Target Start/End: Complemental strand, 52806640 - 52806432
Alignment:
Q  70 caaataggtaactcaaatcatcacttttt-aatttcaaccaattgtatgtatgtttttattctagattgtaa----ttgtttaagattaggcaa------ 158  Q
    |||||||||| ||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||| ||| |    ||||||||||||||| ||          
T  52806640 caaataggtacctcaaatcatctcttttttaatatcaaccaattgtatgcatgtttttattctagagtgtcatactttgtttaagattaggaaacttaaa 52806541  T
Q  159 --cttaaagtgaaagtaagtttgctcaatgttgaac-tatt--aatat-actgtattttctgcagttggttgaattaatttgggttaacatgcactccat 252  Q
      |||||||||||||||||||||||||||||||  | | ||  | ||| | | | ||||||||||||||||||||||| |||||||||| |||| ||| |    
T  52806540 ctcttaaagtgaaagtaagtttgctcaatgttgtccatgttgaactatgaatatgttttctgcagttggttgaattaacttgggttaacttgcattcctt 52806441  T
Q  253 ccatctttc 261  Q
    |||||||||    
T  52806440 ccatctttc 52806432  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 53288024 - 53288075
Alignment:
Q  279 tcgattcgtacaagaatttgttctagttctctttctgtatcattgcctttgc 330  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  53288024 tcgattcgcacaagaatttgttctagttctctttttgtatcattgcctttgc 53288075  T

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Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 11842753 - 11842510
Alignment:
Q  18 actagccagcaaccgagtgtctccccaatggtcatcgaagtacaaatgcaatcaaataggtaactcaaatcatcactttttaatttcaaccaattgtatg 117  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  11842753 actagccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatg 11842654  T
Q  118 tatgtttttattctagattgtaa-------ttgtttaagattaggcaactt-aaagtgaaagtaagtttgctcaatgttgaactattaatatactgtatt 209  Q
    || |||||||||||||||| ||        ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11842653 tacgtttttattctagattctatattgtctttgtttaagattaggcaactttaaagtgaaagtaagtttgctcaatgttgaactattaatatactgtatt 11842554  T
Q  210 ttctgcagttggttgaattaatttgggttaacatgcactccatc 253  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  11842553 ttctgcagttggttgaattattttgggttaacatgcactccatc 11842510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 11841789 - 11841738
Alignment:
Q  279 tcgattcgtacaagaatttgttctagttctctttctgtatcattgcctttgc 330  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  11841789 tcgattcgcacaagaatttgttctagttctctttttgtatcattgcctttgc 11841738  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 23735687 - 23735575
Alignment:
Q  22 gccagcaaccgagtgtctccccaatggtcatcgaagtacaaatgcaatcaaataggtaactcaaatcatcactttttaatttcaaccaattgtatgtatg 121  Q
    ||||| ||||||||||||||||||| || ||| ||   ||||||    |||||||||||||| ||||||||||||||||| ||||||||||||||| |||    
T  23735687 gccaggaaccgagtgtctccccaatcgttatcaaatctcaaatg----caaataggtaactcgaatcatcactttttaatatcaaccaattgtatggatg 23735592  T
Q  122 tttttattctagattgt 138  Q
    |||||||||||||||||    
T  23735591 tttttattctagattgt 23735575  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 23618717 - 23618604
Alignment:
Q  22 gccagcaaccgagtgtctccccaatggtcatcgaagtacaaatgcaatcaaataggtaactcaaatcatcactttttaatttcaaccaattgtatgtatg 121  Q
    ||||| |||||||||||||||||||  ||||| ||   ||||||    |||||||||||||| ||||||||||||||||| ||||||||||||||| |||    
T  23618717 gccaggaaccgagtgtctccccaatcttcatcaaatctcaaatg----caaataggtaactcgaatcatcactttttaatatcaaccaattgtatggatg 23618622  T
Q  122 -tttttattctagattgt 138  Q
     |||||||||||||||||    
T  23618621 ttttttattctagattgt 23618604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 23650018 - 23649950
Alignment:
Q  70 caaataggtaactcaaatcatcactttttaatttcaaccaattgtatgtatgtttttattctagattgt 138  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  23650018 caaataggtaactcgaatcattactttttaatatcaaccaattgtatggatgtttttattctagattgt 23649950  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 23618562 - 23618484
Alignment:
Q  184 atgttgaactattaatatactgtattttctgcagttggttgaattaatttgggttaa-catgcactccatccatctttc 261  Q
    |||||||| |||||||| ||||||||||||||| ||||||||||||||||  ||||| |||| ||| |||| |||||||    
T  23618562 atgttgaattattaatacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatctatctttc 23618484  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 23735533 - 23735455
Alignment:
Q  184 atgttgaactattaatatactgtattttctgcagttggttgaattaatttgggttaa-catgcactccatccatctttc 261  Q
    ||||| || |||||||| ||||||||||||||| ||||||||||||||||  ||||| |||| ||| |||| |||||||    
T  23735533 atgttaaattattaatacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatctatctttc 23735455  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 23626871 - 23626911
Alignment:
Q  193 tattaatatactgtattttctgcagttggttgaattaattt 233  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  23626871 tattaatacactgtattttctgcacttggttgaattaattt 23626911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 23649908 - 23649830
Alignment:
Q  184 atgttgaactattaatatactgtattttctgcagttggttgaattaatttgggttaa-catgcactccatccatctttc 261  Q
    ||||| || ||||| || ||||||||||||||| ||||||||||||||||  ||||| |||| ||| |||| |||||||    
T  23649908 atgtttaattattattacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatctatctttc 23649830  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 23626785 - 23626871
Alignment:
Q  22 gccagcaaccgagtgtctccccaatggtcatcgaagtacaaatgcaatcaaataggtaactcaaatcatcactttttaatttcaaccaatt 112  Q
    |||||||||||||||||||||||||  ||||| ||   ||||||    ||||||||||| |||||| ||| | ||||||| ||||||||||    
T  23626785 gccagcaaccgagtgtctccccaatcatcatcaaatctcaaatg----caaataggtaaatcaaataatctcattttaatatcaaccaatt 23626871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 23708511 - 23708597
Alignment:
Q  22 gccagcaaccgagtgtctccccaatggtcatcgaagtacaaatgcaatcaaataggtaactcaaatcatcactttttaatttcaaccaatt 112  Q
    |||||||||||||||||||||||||  ||||| ||   ||||||    ||||||||||| |||||| ||| | ||||||| ||||||||||    
T  23708511 gccagcaaccgagtgtctccccaatcatcatcaaatctcaaatg----caaataggtaaatcaaataatctcattttaatatcaaccaatt 23708597  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 46021246 - 46021279
Alignment:
Q  225 aattaatttgggttaacatgcactccatccatct 258  Q
    |||||||||| |||||||||||||||||||||||    
T  46021246 aattaatttgagttaacatgcactccatccatct 46021279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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