View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_66 (Length: 331)

Name: NF15465_low_66
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_66
NF15465_low_66
[»] chr5 (20 HSPs)
chr5 (53-295)||(9883765-9884006)
chr5 (187-313)||(9867763-9867888)
chr5 (53-135)||(19044034-19044116)
chr5 (53-144)||(1974454-1974545)
chr5 (63-144)||(40017051-40017132)
chr5 (53-125)||(25898794-25898866)
chr5 (53-145)||(36310544-36310635)
chr5 (53-143)||(41758570-41758661)
chr5 (63-144)||(3461281-3461363)
chr5 (65-143)||(28784628-28784706)
chr5 (58-135)||(11125646-11125723)
chr5 (63-143)||(7083836-7083916)
chr5 (65-144)||(22706474-22706553)
chr5 (53-135)||(10532919-10533001)
chr5 (63-144)||(6427420-6427501)
chr5 (65-135)||(16101023-16101093)
chr5 (53-90)||(10399135-10399172)
chr5 (65-144)||(2599938-2600016)
chr5 (53-95)||(20202540-20202582)
chr5 (63-144)||(4846712-4846793)
[»] chr4 (26 HSPs)
chr4 (53-144)||(13867663-13867754)
chr4 (56-149)||(14990170-14990262)
chr4 (53-141)||(372815-372902)
chr4 (53-144)||(13855941-13856032)
chr4 (53-149)||(18414033-18414131)
chr4 (53-135)||(40221093-40221175)
chr4 (53-143)||(31936181-31936272)
chr4 (18-144)||(40962512-40962640)
chr4 (63-144)||(47043687-47043768)
chr4 (53-135)||(2778102-2778184)
chr4 (53-135)||(49261640-49261722)
chr4 (63-144)||(886897-886978)
chr4 (63-135)||(32935833-32935905)
chr4 (61-149)||(31823141-31823230)
chr4 (63-144)||(49065414-49065495)
chr4 (53-144)||(24608012-24608103)
chr4 (65-144)||(46814151-46814229)
chr4 (53-135)||(53266079-53266161)
chr4 (71-144)||(28796919-28796992)
chr4 (64-144)||(14329123-14329203)
chr4 (53-140)||(33163129-33163216)
chr4 (64-135)||(36174278-36174349)
chr4 (53-143)||(38131576-38131667)
chr4 (65-143)||(46567399-46567478)
chr4 (103-143)||(27761025-27761065)
chr4 (53-140)||(46815239-46815327)
[»] chr7 (19 HSPs)
chr7 (53-149)||(2913164-2913262)
chr7 (53-149)||(8725774-8725871)
chr7 (65-144)||(37524026-37524105)
chr7 (63-144)||(1536944-1537025)
chr7 (63-144)||(34354281-34354362)
chr7 (53-135)||(41219233-41219315)
chr7 (53-144)||(31825916-31826007)
chr7 (66-143)||(29714438-29714515)
chr7 (53-144)||(48219572-48219663)
chr7 (53-144)||(26501000-26501091)
chr7 (53-144)||(26591622-26591713)
chr7 (62-139)||(21613166-21613243)
chr7 (65-144)||(3746641-3746721)
chr7 (53-112)||(21153926-21153985)
chr7 (58-144)||(20377790-20377876)
chr7 (63-108)||(48218491-48218536)
chr7 (96-144)||(12084408-12084456)
chr7 (63-135)||(26502128-26502200)
chr7 (63-135)||(26590514-26590586)
[»] chr3 (19 HSPs)
chr3 (53-149)||(25886163-25886261)
chr3 (62-145)||(25744996-25745079)
chr3 (163-276)||(1520705-1520818)
chr3 (63-144)||(42947663-42947744)
chr3 (63-144)||(53824590-53824671)
chr3 (53-143)||(39415483-39415574)
chr3 (63-144)||(35485543-35485625)
chr3 (53-135)||(48086989-48087071)
chr3 (58-143)||(32211263-32211345)
chr3 (92-149)||(50561576-50561633)
chr3 (53-144)||(6755573-6755664)
chr3 (72-144)||(2325319-2325391)
chr3 (63-143)||(16967681-16967761)
chr3 (53-143)||(25574964-25575055)
chr3 (53-140)||(42384421-42384508)
chr3 (53-135)||(8628577-8628659)
chr3 (210-256)||(49047566-49047612)
chr3 (53-123)||(53825748-53825818)
chr3 (100-144)||(11161931-11161975)
[»] chr1 (24 HSPs)
chr1 (53-149)||(23602812-23602910)
chr1 (53-135)||(41871879-41871961)
chr1 (53-143)||(49597330-49597420)
chr1 (63-144)||(30308484-30308565)
chr1 (63-144)||(47485687-47485768)
chr1 (53-144)||(5767461-5767552)
chr1 (53-144)||(45690465-45690557)
chr1 (51-134)||(3660033-3660116)
chr1 (53-143)||(9343614-9343705)
chr1 (53-144)||(27034184-27034275)
chr1 (53-135)||(48566904-48566986)
chr1 (63-144)||(27033068-27033149)
chr1 (63-144)||(39222840-39222921)
chr1 (63-135)||(21483053-21483125)
chr1 (53-144)||(26013537-26013629)
chr1 (63-143)||(46923917-46923997)
chr1 (63-135)||(50065771-50065843)
chr1 (187-276)||(2912510-2912599)
chr1 (53-90)||(3782092-3782129)
chr1 (56-144)||(5766683-5766772)
chr1 (63-144)||(18171832-18171913)
chr1 (53-149)||(11012268-11012366)
chr1 (53-144)||(50066958-50067048)
chr1 (63-136)||(47983818-47983891)
[»] chr2 (10 HSPs)
chr2 (64-144)||(8556375-8556455)
chr2 (53-149)||(13785176-13785273)
chr2 (53-149)||(25685911-25686008)
chr2 (53-143)||(24937255-24937346)
chr2 (63-144)||(29132502-29132584)
chr2 (65-144)||(12967518-12967597)
chr2 (53-90)||(20149455-20149492)
chr2 (63-144)||(22495772-22495853)
chr2 (53-134)||(16710104-16710185)
chr2 (64-108)||(42121714-42121758)
[»] chr8 (10 HSPs)
chr8 (58-149)||(43835187-43835279)
chr8 (63-144)||(28704141-28704222)
chr8 (53-135)||(34471450-34471532)
chr8 (63-140)||(43635411-43635488)
chr8 (53-144)||(43636475-43636566)
chr8 (63-144)||(23542610-23542691)
chr8 (63-135)||(4639915-4639987)
chr8 (80-143)||(10829626-10829689)
chr8 (53-144)||(1931485-1931578)
chr8 (53-90)||(3964185-3964222)
[»] scaffold0223 (1 HSPs)
scaffold0223 (53-135)||(15938-16020)
[»] scaffold0861 (1 HSPs)
scaffold0861 (63-144)||(3578-3658)
[»] chr6 (8 HSPs)
chr6 (63-144)||(16444565-16444646)
chr6 (63-144)||(35053605-35053686)
chr6 (53-144)||(13312728-13312819)
chr6 (63-144)||(14153652-14153733)
chr6 (64-144)||(9400159-9400239)
chr6 (53-135)||(11718507-11718589)
chr6 (64-144)||(14830690-14830770)
chr6 (53-140)||(35054725-35054812)
[»] scaffold1700 (1 HSPs)
scaffold1700 (53-144)||(985-1076)
[»] scaffold1455 (1 HSPs)
scaffold1455 (66-107)||(75-116)
[»] scaffold0500 (1 HSPs)
scaffold0500 (100-144)||(1288-1332)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 53 - 295
Target Start/End: Original strand, 9883765 - 9884006
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaagttgtnnn 152  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  9883765 tgagaaaatggggaagtttggaggggtatttataggtatgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaagttgtaaa 9883864  T
Q  153 nnnnnncgggtagaaggtataggctcatacgacaaggatgatgattatgaagtgtatcttactgatggtgattcaaattcaactgtaactactactgcta 252  Q
          || ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9883865 aaaaa-cgtgtagaaggtataggctcatacgacaaggatgacaattatgaagtgcatcttactgatggtgattcaaattcaactgtaactactactgcta 9883963  T
Q  253 gaagacctttcaaaaagaaagctcataacacagattcatcacc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9883964 gaagacctttcaaaaagaaagctcataacacagattcatcacc 9884006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 187 - 313
Target Start/End: Complemental strand, 9867888 - 9867763
Alignment:
Q  187 aggatgatgattatgaagtgtatcttactgatggtgattcaaattcaactgtaactactactgctagaagacctttcaaaaagaaagctcataacacaga 286  Q
    |||||||||| ||||||||| |||||| ||||| ||||||||||||||  | || || ||||| ||||||||||| ||||||||||||||||||||||||    
T  9867888 aggatgatgactatgaagtggatcttattgatgatgattcaaattcaataggaa-tattactggtagaagaccttccaaaaagaaagctcataacacaga 9867790  T
Q  287 ttcatcacctttaatggaaggtgatgg 313  Q
    | || | |||||||| ||| |||||||    
T  9867789 tccaccgcctttaatagaatgtgatgg 9867763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 19044116 - 19044034
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||| || ||||||    
T  19044116 tgagaaaatggggaagtttggaggggtatttataggtgggaatgataacataggttataaatacaataaatgttgtaaaaaaa 19044034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 1974545 - 1974454
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| | ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| ||||||||||||||||||    
T  1974545 tgagaaattagggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtcaaaaaacgtgtaaaa 1974454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 40017051 - 40017132
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| ||||||||||||||||||    
T  40017051 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtcaaaaaacgtgtaaaa 40017132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 25898866 - 25898794
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgt 125  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||||||  |||||||||||  |||||||||||    
T  25898866 tgagaaaatagggaagtatggaggggtatttataggtgggaatggtagtataggttataaccaccataaatgt 25898794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 36310635 - 36310544
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaag 145  Q
    ||||||||||| |||| |||||||| |||||||||| | ||||||||||||| ||| ||| |||  |||||| ||||||||||||||||||||    
T  36310635 tgagaaaatggtgaaggttggagggatatttatagggg-gaatggtaacataagttttaactacactaaatgcagtcaaaaaacgtgtaaaag 36310544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 41758570 - 41758661
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaa 143  Q
    |||| |||| ||||||| |||||||||||||||||||| ||||||||   ||||||||||  ||||||||||| ||| ||||||||||||||    
T  41758570 tgaggaaatagggaagtatggaggggtatttataggtgagaatggtagtgtaggttataaccaccataaatgtggtcaaaaaaacgtgtaaa 41758661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 3461281 - 3461363
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||||||| |||||||||||||||    
T  3461281 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtagtcaaaaaaacgtgtaaaa 3461363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 28784628 - 28784706
Alignment:
Q  65 gaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaa 143  Q
    ||||| |||||||||||||||||||| |||| |||| ||| |||||||  |||||||||||  ||||||||||||||||    
T  28784628 gaagtatggaggggtatttataggtgggaatagtaatataagttataacaaccataaatgtgttcaaaaaacgtgtaaa 28784706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 11125646 - 11125723
Alignment:
Q  58 aaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    ||||| |||||||||||||| |||||||||||| ||||| ||  ||||| ||||| |||||||| |||||||||||||    
T  11125646 aaatgaggaagtttggagggatatttataggtgggaatgatagtataggatataactaccataagtgtagtcaaaaaa 11125723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 7083836 - 7083916
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaa 143  Q
    ||||||| ||||||| |||||||||||| ||||||||  ||||||| ||| || ||| ||||| |||||||||||||||||    
T  7083836 gggaagtatggagggatatttataggtgggaatggtagtataggttgtaaatatcattaatgtggtcaaaaaacgtgtaaa 7083916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 22706474 - 22706553
Alignment:
Q  65 gaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||| ||||||||||||||  |||  ||||||||| ||||||| ||| |||||| ||||| ||||||||||||||||||    
T  22706474 gaagtatggaggggtatttaagggtaggaatggtaatataggttgtaaataccattaatgtggtcaaaaaacgtgtaaaa 22706553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 10533001 - 10532919
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||| |||| ||||||| ||||||||||||||||||||  |||||||  ||||||||||| |||||| ||||| || ||||||    
T  10533001 tgaggaaatagggaagtatggaggggtatttataggtgaaaatggtagtataggttataaataccattaatgtggtaaaaaaa 10532919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 6427501 - 6427420
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||| ||| ||| |||||| |||||  |||||||| ||||||||    
T  6427501 gggaagtatggaggggtatttataggtgggaatggtagtataagttgtaaataccattaatgtgatcaaaaaatgtgtaaaa 6427420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 16101093 - 16101023
Alignment:
Q  65 gaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    ||||| |||||||||||||||||||| |||||  |  ||||||||||| |||| ||||||| |||||||||    
T  16101093 gaagtatggaggggtatttataggtgagaatgacagtataggttataactaccgtaaatgtggtcaaaaaa 16101023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 10399135 - 10399172
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtg 90  Q
    |||| |||||||||||||||||||||||||||||||||    
T  10399135 tgaggaaatggggaagtttggaggggtatttataggtg 10399172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 2600016 - 2599938
Alignment:
Q  65 gaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||||||||||| ||||||||||| | || || ||||||| || |||  ||||| |||| ||||||||||||||||||||    
T  2600016 gaagtttggaggtgtatttataggggggattg-taacatatgtaatatctaccacaaatatagtcaaaaaacgtgtaaaa 2599938  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 20202540 - 20202582
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaat 95  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||    
T  20202540 tgagaaaatagggaagtatggaggggtatttataggtgggaat 20202582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 4846712 - 4846793
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| || ||| ||||||||||||| ||||| ||  ||||||  |||  ||||| ||||| ||||||||||||||||||    
T  4846712 gggaagtatgaaggagtatttataggtgggaatgatagtataggtcgtaaacaccattaatgtggtcaaaaaacgtgtaaaa 4846793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 13867663 - 13867754
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  13867663 tgaggaaatggggaagtttggaggagtatttataggtgggaatggtaacataggttataactacaataaatatagtcaaaaaacgtgtaaaa 13867754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 14990170 - 14990262
Alignment:
Q  56 gaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaagttgt 149  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||  |||||||| || ||||||||||||||||||||||||||||||||||||    
T  14990170 gaaaatggggaagtttggaggggtatttataagtgagaatggtagtataggtta-aactaccataaatgtagtcaaaaaacgtgtaaaagttgt 14990262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 372902 - 372815
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgta 141  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||| ||||||| ||| ||||||||||||    
T  372902 tgagaaaatggggaagtttggaggggaatttataggtgggaatggtaacatatgttataactacaataaatgcagt-aaaaaacgtgta 372815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 13855941 - 13856032
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| ||||| |||| ||||||||| |||||||||||| ||||||||||||||||||||| ||| || ||| ||||||||||||||||||||    
T  13855941 tgaggaaatgaggaattttggagggatatttataggtgggaatggtaacataggttataactacaattaatatagtcaaaaaacgtgtaaaa 13856032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 18414033 - 18414131
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagt--caaaaaacgtgtaaaagttgt 149  Q
    |||||||||| ||||||||||||| |||| |||||||| ||||| ||||||||||||||| |||||||||||||||   |||||||||||| |||||||    
T  18414033 tgagaaaatgaggaagtttggaggagtatatataggtgggaatgataacataggttataactaccataaatgtagtaaaaaaaaacgtgtagaagttgt 18414131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 40221175 - 40221093
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||| ||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||| ||||||    
T  40221175 tgaggaaatgaggaagtttggaggggcatttacaggtgggaatggtaacataggttataaataccataaatgtagtaaaaaaa 40221093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 31936181 - 31936272
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaa 143  Q
    |||| |||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| | | ||||||||||||||    
T  31936181 tgaggaaatagggaagtatggaggggtatttataggtgagaatggtaatataggttataactaccataaatgtggacaaaaaaacgtgtaaa 31936272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 40962512 - 40962640
Alignment:
Q  18 cataggggaagatagcgaggaggagaatgagaa--tatgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagta 115  Q
    |||| ||| |||||| |||||||||| |||||   | |||| ||||||||||||||||||| ||||||||| | |   || |||||||||||||||  ||    
T  40962512 catatggggagatagtgaggaggagagtgagatggtgtgaggaaatggggaagtttggaggtgtatttatatgaggagattgtaacataggttatatcta 40962611  T
Q  116 ccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||||||| ||||||||||| ||||||||    
T  40962612 ccataaatatagtcaaaaaatgtgtaaaa 40962640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 47043687 - 47043768
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| ||||||||||||||||||    
T  47043687 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtcaaaaaacgtgtaaaa 47043768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 2778184 - 2778102
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||| |||| ||||||| || |||||||||| |||||| ||||||||  ||||||||||| |||||||||||| |||||||||    
T  2778184 tgaggaaatagggaagtatgaaggggtatttgtaggtgggaatggtagtataggttataactaccataaatgtggtcaaaaaa 2778102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 49261640 - 49261722
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||| ||||| |||||||||||||| |||||||||||| |||| |||||||| ||||| | ||| ||||||||||| ||||||    
T  49261640 tgaggaaatgaggaagtttggagggatatttataggtgggaatagtaacatatgttatgactacaataaatgtagtaaaaaaa 49261722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 886897 - 886978
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  |||| || |||  ||||| ||||| ||||||||||||||||||    
T  886897 gggaagtatggaggggtatttataggtgggaatggtagtatagtttgtaaacaccattaatgtggtcaaaaaacgtgtaaaa 886978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 32935905 - 32935833
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    ||||||| |||||||||||||||||||| ||||||||  |||||||||||  ||||| ||||| |||||||||    
T  32935905 gggaagtatggaggggtatttataggtgggaatggtagtataggttataaacaccattaatgtggtcaaaaaa 32935833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 31823230 - 31823141
Alignment:
Q  61 tggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaaagttgt 149  Q
    |||| |||| |||||||||||||||||||| ||||| ||   ||||||||||  ||||||||||| ||| ||||||||||||||| ||||    
T  31823230 tgggaaagtatggaggggtatttataggtgggaatgatagtgtaggttataaccaccataaatgtggtcaaaaaaacgtgtaaaatttgt 31823141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 49065414 - 49065495
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||| ||||||||||||||| ||||||||  ||||||| ||| || ||| ||||| |||||||||| |||||||    
T  49065414 gggaagtatggaagggtatttataggtgggaatggtagtataggttgtaaatatcattaatgtggtcaaaaaacatgtaaaa 49065495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 24608012 - 24608103
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| ||||||| || ||| |||||||||||||||  |   || |||||||||||||||  |||||||||| ||||||||||||||| ||||    
T  24608012 tgaggaaatgggaaaatttagaggggtatttatagagggagattgtaacataggttatatctaccataaatatagtcaaaaaacgtgaaaaa 24608103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 46814229 - 46814151
Alignment:
Q  65 gaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| ||| ||||||||||||||    
T  46814229 gaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtc-aaaaacgtgtaaaa 46814151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 53266161 - 53266079
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    ||||||| | ||||||| || ||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| |||||||||    
T  53266161 tgagaaattagggaagtatgaaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtcaaaaaa 53266079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 28796992 - 28796919
Alignment:
Q  71 tggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||||||||||||||||  |||||||  ||||||| |||  ||||| ||||| ||||||||| ||||||||    
T  28796992 tggaggggtatttataggtggaaatggtagtataggttgtaaacaccattaatgtggtcaaaaaatgtgtaaaa 28796919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 14329203 - 14329123
Alignment:
Q  64 ggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||||| | |||||||||||||||||| ||||||||  ||  ||| |||  ||||| ||||| ||||||||||||||||||    
T  14329203 ggaagtatagaggggtatttataggtgggaatggtagtatgagttgtaaacaccattaatgtggtcaaaaaacgtgtaaaa 14329123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 33163216 - 33163129
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgt 140  Q
    |||| |||||||||||||| |||| ||||||||||| |   || |||||||||||||||  |||||||| |   ||||||||||||||    
T  33163216 tgaggaaatggggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccataagtagggtcaaaaaacgtgt 33163129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 36174278 - 36174349
Alignment:
Q  64 ggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| |||||| | ||||||    
T  36174278 ggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtaataaaaaaa 36174349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 38131667 - 38131576
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaa 143  Q
    ||||||||| || |||| |||||| |||||||||||||  |||| ||   ||||||||||  ||||||||||| ||| ||||||||||||||    
T  38131667 tgagaaaataggtaagtatggaggagtatttataggtggaaatgatagtgtaggttataaccaccataaatgtggtcaaaaaaacgtgtaaa 38131576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 46567478 - 46567399
Alignment:
Q  65 gaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaa 143  Q
    ||||| |||||||||||||||| |||  |||||||   ||||||||||  ||||||||||| ||| ||||||||||||||    
T  46567478 gaagtatggaggggtatttataagtggaaatggtagtgtaggttataaccaccataaatgtggtcaaaaaaacgtgtaaa 46567399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 27761025 - 27761065
Alignment:
Q  103 taggttataagtaccataaatgtagtcaaaaaacgtgtaaa 143  Q
    ||||||||||  ||||||||||| |||||||||||||||||    
T  27761025 taggttataaccaccataaatgtggtcaaaaaacgtgtaaa 27761065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 46815327 - 46815239
Alignment:
Q  53 tgagaaaatggggaagtttg-gaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgt 140  Q
    |||| ||||||||||||||  |||| ||||||||||| |   || |||||||||||||||  ||||||||||   ||||||||||||||    
T  46815327 tgaggaaatggggaagttttagaggtgtatttatagggggagattgtaacataggttatatctaccataaatagggtcaaaaaacgtgt 46815239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 2913164 - 2913262
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagt--caaaaaacgtgtaaaagttgt 149  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||| |||||||||||||||   |||||||||||||| |||||    
T  2913164 tgagaaaatgtggaagtttggagggatatttataggtgagaatggtaatataggttataactaccataaatgtagtaaaaaaaaacgtgtaaaggttgt 2913262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 8725871 - 8725774
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa-cgtgtaaaagttgt 149  Q
    |||| ||||| | ||||||||||||||||||||||||  ||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||    
T  8725871 tgaggaaatgagaaagtttggaggggtatttataggttggaatgataacataggttataactacaataaatgtagtcaaaaaatcgtgtaaaacttgt 8725774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 37524026 - 37524105
Alignment:
Q  65 gaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||| ||| |||||| ||||| ||||||||||||||||||    
T  37524026 gaagtatggaggggtatttataggtgggaatggtagtataggttttaaataccattaatgtggtcaaaaaacgtgtaaaa 37524105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 1536944 - 1537025
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| ||||||||||||||||||    
T  1536944 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtcaaaaaacgtgtaaaa 1537025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 34354281 - 34354362
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| ||||||||||||||||||    
T  34354281 gggaagtatggaggggtatttataggtgagaatggtagtataggttgtaaagaccattaatgtggtcaaaaaacgtgtaaaa 34354362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 41219233 - 41219315
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    ||||||||| |||||||  ||||||||||||||||||| ||||||||   ||||||||||  ||||||||||| |||||||||    
T  41219233 tgagaaaatagggaagtaaggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatgtggtcaaaaaa 41219315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 31825916 - 31826007
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| | || |||| ||||||||||||||||||||  |||||||  ||||||| |||  ||||| ||||| ||||||||||||||||||    
T  31825916 tgagaaattaggaaagtatggaggggtatttataggtggaaatggtagtataggttgtaaacaccattaatgtggtcaaaaaacgtgtaaaa 31826007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 29714515 - 29714438
Alignment:
Q  66 aagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaa 143  Q
    |||| |||||||||||||||||||| |||||||   ||||||||||   |||||| |||| |||||||||||||||||    
T  29714515 aagtatggaggggtatttataggtgggaatggtggtataggttatagcaaccatagatgttgtcaaaaaacgtgtaaa 29714438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 48219663 - 48219572
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtga-atggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| |||||||||||||| |||| |||||||||| || || || |||||||||||||||  ||||||||||   ||||||||||||||||||    
T  48219663 tgaggaaatggggaagtttagaggtgtatttatag-tgggagattgtaacataggttatatctaccataaatagggtcaaaaaacgtgtaaaa 48219572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 26501000 - 26501091
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| |||| ||||||||| |||| ||||||||||| |   || |||||||||||||||  ||||||||||   ||||||||||||||||||    
T  26501000 tgaggaaattgggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccataaatagggtcaaaaaacgtgtaaaa 26501091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 26591713 - 26591622
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| |||| ||||||||| |||| ||||||||||| |   || |||||||||||||||  ||||||||||   ||||||||||||||||||    
T  26591713 tgaggaaattgggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccataaatagggtcaaaaaacgtgtaaaa 26591622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 21613243 - 21613166
Alignment:
Q  62 ggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtg 139  Q
    |||||||||| |||| ||||||||||| |   || |||||||||||||||  |||||||||| |||| ||||||||||    
T  21613243 ggggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccataaatatagtaaaaaaacgtg 21613166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 3746641 - 3746721
Alignment:
Q  65 gaagtttggaggggtatttataggtgtgaatgg-taacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| ||||| ||||||||||||| | |||||  | ||||||||||||| |||  |||||| |||||||||||||||||||    
T  3746641 gaaggttggaagggtatttataggggggaatgacttacataggttataactacactaaatgcagtcaaaaaacgtgtaaaa 3746721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 21153985 - 21153926
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataa 112  Q
    |||| |||| ||||||| |||||||||||||||||| | ||||||||  |||||||||||    
T  21153985 tgaggaaatagggaagtatggaggggtatttataggcgggaatggtagtataggttataa 21153926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 20377876 - 20377790
Alignment:
Q  58 aaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||| |||| ||||||||||| |   || |||||||||||||||  ||||||||||    |||||||||||||||||    
T  20377876 aaatgggaaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccataaataggttcaaaaaacgtgtaaaa 20377790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 48218536 - 48218491
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggtt 108  Q
    ||||||| |||||||||||||||||||| ||||||||  |||||||    
T  48218536 gggaagtatggaggggtatttataggtgagaatggtagtataggtt 48218491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 12084408 - 12084456
Alignment:
Q  96 ggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||||||||| ||| |||  |||||| |||||||||||||||||||    
T  12084408 ggtaacataggttttaactacactaaatgcagtcaaaaaacgtgtaaaa 12084456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 26502128 - 26502200
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    ||||||| |||||||||||||||||| | ||||||||  ||||||| |||  || || ||||| |||||||||    
T  26502128 gggaagtatggaggggtatttataggggggaatggtagtataggttgtaaacacaattaatgtggtcaaaaaa 26502200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 26590586 - 26590514
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    ||||||| |||||||||||||||||| | ||||||||  ||||||| |||  || || ||||| |||||||||    
T  26590586 gggaagtatggaggggtatttataggggggaatggtagtataggttgtaaacacaattaatgtggtcaaaaaa 26590514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 25886261 - 25886163
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaa--aaaacgtgtaaaagttgt 149  Q
    |||| |||||| ||||||||||||| |||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  25886261 tgaggaaatggagaagtttggagggatatttataggtgggaatgataagataggttataactaccataaatgtagtcaaaaaaaacgtgtaaaagttgt 25886163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 25744996 - 25745079
Alignment:
Q  62 ggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaag 145  Q
    ||||||||| ||||||||||||||| ||| ||||  ||| ||||||||||| |||||||||| ||||||||||||||| |||||    
T  25744996 ggggaagttaggaggggtatttataagtgggaataataaaataggttataactaccataaatatagtcaaaaaacgtgaaaaag 25745079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 1520818 - 1520705
Alignment:
Q  163 tagaaggtataggctcatacgacaaggatgatgattatgaagtgtatcttactgatggtgattcaaattcaactgtaactactactgctagaagaccttt 262  Q
    |||||||| |||||||  ||| | | |||||||||| ||||||| ||||||| || | |||||||||||||||   ||| |||||| | ||||||||||     
T  1520818 tagaaggtgtaggctccgacggcgaagatgatgattgtgaagtggatcttaccgacgttgattcaaattcaacaagaaccactacttccagaagaccttc 1520719  T
Q  263 caaaaagaaagctc 276  Q
    ||||||||||||||    
T  1520718 caaaaagaaagctc 1520705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 42947744 - 42947663
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| |||||  |||||||||||||||||    
T  42947744 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtgatcaaaaaacgtgtaaaa 42947663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 53824671 - 53824590
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  || || ||||| ||||||||||||||||||    
T  53824671 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacacgattaatgtggtcaaaaaacgtgtaaaa 53824590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 39415574 - 39415483
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaa 143  Q
    |||| |||| ||||||| |||||||||||||||||||| ||||||||   ||||||||||  ||||||||| | ||| ||||||||||||||    
T  39415574 tgaggaaatagggaagtatggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatatggtcaaaaaaacgtgtaaa 39415483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 35485625 - 35485543
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| ||| |||||||||||||||    
T  35485625 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtcaaaaaaacgtgtaaaa 35485543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 48087071 - 48086989
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||| |||| ||||||| |||||||||||||||||||| ||||||||   |||||||||   ||||||||||| |||||||||    
T  48087071 tgaggaaatagggaagtatggaggggtatttataggtgggaatggtagtgtaggttatatccaccataaatgtggtcaaaaaa 48086989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 32211345 - 32211263
Alignment:
Q  58 aaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaa-aaaacgtgtaaa 143  Q
    |||||||||||||| |||||||||    || || ||||||||  ||||||||||| |||||||||||||||||| ||||||||||||    
T  32211345 aaatggggaagttttgaggggtat----agatgggaatggtagtataggttataactaccataaatgtagtcaaaaaaacgtgtaaa 32211263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 50561633 - 50561576
Alignment:
Q  92 gaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaagttgt 149  Q
    |||||||||||||| |||||| ||| ||||||||||| ||||||||||||||| ||||    
T  50561633 gaatggtaacatagattataactacaataaatgtagtaaaaaaacgtgtaaaacttgt 50561576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 6755573 - 6755664
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| ||||||| |||||| |||  ||||||||||| |   || |||||||||||||||  |||||||||| ||||||||||||||| ||||    
T  6755573 tgaggaaatgggaaagtttagagatgtatttatagggggagattgtaacataggttatatctaccataaatatagtcaaaaaacgtgaaaaa 6755664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 2325319 - 2325391
Alignment:
Q  72 ggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||| ||||||||||||| ||||||||  || |||| |||  ||||| ||||| ||||||||||||||||||    
T  2325319 ggaggagtatttataggtgggaatggtagtattggttgtaaacaccattaatgttgtcaaaaaacgtgtaaaa 2325391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 16967681 - 16967761
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaa 143  Q
    ||||||| ||||||||||||||||| || ||||||||  ||||||| |||  | ||| | ||| |||||||||||||||||    
T  16967681 gggaagtatggaggggtatttatagatgggaatggtagtataggttgtaaacaacattagtgtggtcaaaaaacgtgtaaa 16967761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 25575055 - 25574964
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaa 143  Q
    |||| |||| ||||||| |||||| ||||||||||||| ||||||||   || |||||||  |||||||| || ||| ||||||||||||||    
T  25575055 tgaggaaatagggaagtatggaggagtatttataggtgggaatggtagtgtatgttataaccaccataaacgtggtcaaaaaaacgtgtaaa 25574964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 42384421 - 42384508
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgt 140  Q
    |||| ||||||| |||||| |||| ||||||||||| |   || ||||||||||||||| |||||||||||   ||||||||| ||||    
T  42384421 tgaggaaatgggaaagtttagaggtgtatttatagggggagattgtaacataggttatatgtaccataaatagggtcaaaaaatgtgt 42384508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 8628659 - 8628577
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||| |||| ||||||| ||||||| |||||||||||| ||||||||  ||||||| ||| || ||| ||||| || ||||||    
T  8628659 tgagtaaatagggaagtatggagggatatttataggtgggaatggtagtataggttgtaaatatcattaatgtggtaaaaaaa 8628577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 49047566 - 49047612
Alignment:
Q  210 cttactgatggtgattcaaattcaactgtaactactactgctagaag 256  Q
    |||||||| |||||||||||||| |||| |||||||||| |||||||    
T  49047566 cttactgacggtgattcaaattccactggaactactactactagaag 49047612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 53825818 - 53825748
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaat 123  Q
    |||| |||||||||||||| |||| ||||||||||| |   || |||||||||||||||  ||||||||||    
T  53825818 tgaggaaatggggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccataaat 53825748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 11161975 - 11161931
Alignment:
Q  100 acataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||||||||| |||  |||||| |||||||||||||||||||    
T  11161975 acataggttataactacactaaatgcagtcaaaaaacgtgtaaaa 11161931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 23602812 - 23602910
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagt--caaaaaacgtgtaaaagttgt 149  Q
    |||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||||| ||||   |||||| |||||||||||||    
T  23602812 tgaggaaatggggaagtttagagggatatttataggtgagaatggtaacataggttataactaccataaatctagtaaaaaaaaaagtgtaaaagttgt 23602910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 41871961 - 41871879
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||| |||| ||||||| |||||||||||||||||||| ||||||||   ||||||||||  ||||||||||| |||||||||    
T  41871961 tgaggaaatagggaagtatggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatgtggtcaaaaaa 41871879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 49597420 - 49597330
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaa 143  Q
    |||| |||| ||||||| |||||||||||||||||||| |||||||    ||||||||||  ||||||||||| ||||||||| |||||||    
T  49597420 tgaggaaatagggaagtatggaggggtatttataggtgggaatggtggtgtaggttataaccaccataaatgtggtcaaaaaatgtgtaaa 49597330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 30308565 - 30308484
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| | |||||||||||||||||| ||||||||  ||||||| ||| |||||| ||||| |||||||||||| |||||    
T  30308565 gggaagtattgaggggtatttataggtgggaatggtagtataggttgtaaataccattaatgtggtcaaaaaacgtataaaa 30308484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 47485768 - 47485687
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| ||||||||| ||||||||    
T  47485768 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtcaaaaaaagtgtaaaa 47485687  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 5767461 - 5767552
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa-cgtgtaaaa 144  Q
    |||||||||||||||||||||| | ||||||||||  | | || |||||||||||||||  |||||||||| ||||||||||| |||||||||    
T  5767461 tgagaaaatggggaagtttggaagtgtatttatagaggag-attgtaacataggttatatctaccataaatatagtcaaaaaatcgtgtaaaa 5767552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 45690465 - 45690557
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtga-atggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| |||||||||||||| |||| ||||||||||| | || || |||||||||||||||  ||||||||||   ||||||||||||||||||    
T  45690465 tgaggaaatggggaagtttagaggtgtatttataggggggagattgtaacataggttatatctaccataaatagggtcaaaaaacgtgtaaaa 45690557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 3660033 - 3660116
Alignment:
Q  51 tatgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaa 134  Q
    ||||||||| | ||||||| |||||| ||||||||||||| ||||||||  ||||||| ||| |||||| ||||| ||||||||    
T  3660033 tatgagaaattagggaagtatggaggagtatttataggtgggaatggtagtataggttgtaaataccattaatgtggtcaaaaa 3660116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 9343705 - 9343614
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagt-caaaaaacgtgtaaa 143  Q
    |||| |||| ||||||| ||||||| |||||||||||| ||||| ||  ||||||||||| |||||||||||| ||  ||||||||||||||    
T  9343705 tgaggaaatagggaagtatggagggatatttataggtgggaatgatagtataggttataactaccataaatgtggtaaaaaaaacgtgtaaa 9343614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 27034275 - 27034184
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| |||||| ||||||| |||| ||||||||||| |   || |||||||||||||||  ||||||||||  |||||||||||||||||||    
T  27034275 tgaggaaatggagaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccataaatagagtcaaaaaacgtgtaaaa 27034184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 48566986 - 48566904
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||| |||| ||||| | |||||||||||||||||||| ||||||||   ||||||||||  ||||||||||| |||||||||    
T  48566986 tgaggaaatagggaaatatggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatgtggtcaaaaaa 48566904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 27033149 - 27033068
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||| ||  |||||||||||  | ||| || || ||||||||||||||||||    
T  27033149 gggaagtatggaggggtatttataggtgagaatgatagtataggttataaacatcattaacgtggtcaaaaaacgtgtaaaa 27033068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 39222921 - 39222840
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||| ||| ||||||||  |||||||  || |||||| ||||| ||||||||| ||||||||    
T  39222921 gggaagtatggaggggtatttatacgtgggaatggtagtataggttgaaaataccattaatgtggtcaaaaaatgtgtaaaa 39222840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 21483125 - 21483053
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    ||||||| |||||||||||||||| ||| ||||||||  ||||||| ||| |||||| ||||| |||||||||    
T  21483125 gggaagtatggaggggtatttatatgtgggaatggtagtataggttgtaaataccattaatgtggtcaaaaaa 21483053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 26013537 - 26013629
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtattt-ataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| |||| ||||||| ||||| ||||||| ||||||| ||||| ||  ||| |||||||  | ||||||||||||||||||||||||||||    
T  26013537 tgaggaaatagggaagtatggagaggtattttataggtgagaatgatagtataagttataacaaacataaatgtagtcaaaaaacgtgtaaaa 26013629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 46923997 - 46923917
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaa 143  Q
    ||||||| ||||| | |||||||||||| ||||| ||  ||||||| ||| |||||| ||||| |||||||||||||||||    
T  46923997 gggaagtatggagagatatttataggtgggaatgatagtataggttgtaaataccattaatgtggtcaaaaaacgtgtaaa 46923917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 50065843 - 50065771
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| |||||||||    
T  50065843 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtcaaaaaa 50065771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 2912599 - 2912510
Alignment:
Q  187 aggatgatgattatgaagtgtatcttactgatggtgattcaaattcaactgtaactactactgctagaagacctttcaaaaagaaagctc 276  Q
    ||||||| |||||||||||| ||| ||| || |||||||||||||||||   |||||||||  | | |||||||| |||||||| |||||    
T  2912599 aggatgacgattatgaagtggatcataccgacggtgattcaaattcaacaagaactactacatccaaaagaccttccaaaaagacagctc 2912510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 3782129 - 3782092
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtg 90  Q
    |||||||||| |||||||||||||||||||||||||||    
T  3782129 tgagaaaatgaggaagtttggaggggtatttataggtg 3782092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 5766683 - 5766772
Alignment:
Q  56 gaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa-cgtgtaaaa 144  Q
    ||||||||| ||||||||||| ||||||||||| |   || |||||||||||||||  |||||||||  ||| ||||||| |||||||||    
T  5766683 gaaaatgggaaagtttggaggtgtatttatagggggagattgtaacataggttatatctaccataaacatagccaaaaaatcgtgtaaaa 5766772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 18171832 - 18171913
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| ||||||| |||||||| ||| ||||||||  ||||||| |||  ||||| ||| | ||||||||||||||||||    
T  18171832 gggaagtatggagggatatttataagtgggaatggtagtataggttgtaaacaccattaatatggtcaaaaaacgtgtaaaa 18171913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 11012366 - 11012268
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagt--caaaaaacgtgtaaaagttgt 149  Q
    |||| |||| ||||||| || | ||||||||||||||| ||||||||   ||||||||||  ||||||||||| ||   |||||||||||||| |||||    
T  11012366 tgaggaaatagggaagtatgaaagggtatttataggtgggaatggtagtgtaggttataaccaccataaatgtggtaaaaaaaaacgtgtaaaggttgt 11012268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 50067048 - 50066958
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| |||||||||||||| |||  ||||||||||| | || || ||||||||||||||  |||||| |||   ||||||||||||||||||    
T  50067048 tgaggaaatggggaagtttagagatgtatttataggggggattg-taacataggttatatctaccattaatagggtcaaaaaacgtgtaaaa 50066958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 47983891 - 47983818
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaac 136  Q
    ||||||||| |||| ||||||||| | |   || |||||||||||||||  |||||||||| ||||||||||||    
T  47983891 gggaagtttagaggtgtatttataaggggagattgtaacataggttatatttaccataaatatagtcaaaaaac 47983818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 8556455 - 8556375
Alignment:
Q  64 ggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||||| ||||||||||||||||||||  |||||||  ||||||||||| |||||| ||||||||||||||||||||||||    
T  8556455 ggaagtatggaggggtatttataggtggaaatggtagtataggttataaataccattaatgtagtcaaaaaacgtgtaaaa 8556375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 13785273 - 13785176
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaaagttgt 149  Q
    |||| |||| || |||| |||||||||||||||||||| ||||||||  |||||||||||  ||||||||||| ||| |||||||||||| |||||||    
T  13785273 tgaggaaataggaaagtatggaggggtatttataggtgggaatggtagtataggttataaccaccataaatgtggtcaaaaaaacgtgtagaagttgt 13785176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 25685911 - 25686008
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaa-acgtgtaaaagttgt 149  Q
    |||| |||| ||||||| |||||||||||||||||||| ||||||||   ||||||||||  ||||||||||| |||||||| ||||||||| |||||    
T  25685911 tgaggaaatagggaagtatggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatgtggtcaaaaatacgtgtaaaggttgt 25686008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 24937255 - 24937346
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaa-acgtgtaaa 143  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||| ||   ||||||||||  ||||||||||| |||||||| |||||||||    
T  24937255 tgagaaaatagggaagtatggaggggtatttataggtgggaatgatagtgtaggttataaccaccataaatgtggtcaaaaatacgtgtaaa 24937346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 29132502 - 29132584
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtc-aaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||| ||| ||||||| ||| |||||| ||||| ||| |||||||||||||||    
T  29132502 gggaagtatggaggggtatttataggtgggaatgataatataggttgtaaataccattaatgtggtcaaaaaaacgtgtaaaa 29132584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 12967597 - 12967518
Alignment:
Q  65 gaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||| |||||||||||||||||||| ||||||||  ||||||| |||  | ||| ||||| ||||||||||||||||||    
T  12967597 gaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacatcattaatgtggtcaaaaaacgtgtaaaa 12967518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 20149455 - 20149492
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtg 90  Q
    |||| |||||||||||||||||||||||||||||||||    
T  20149455 tgaggaaatggggaagtttggaggggtatttataggtg 20149492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 22495772 - 22495853
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| || ||||||||||||||||| ||||||||  |||| || |||  ||||| ||||| ||||||||| ||||||||    
T  22495772 gggaagtatgaaggggtatttataggtgggaatggtagtatagattgtaaacaccattaatgtggtcaaaaaaagtgtaaaa 22495853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 16710104 - 16710185
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaa 134  Q
    |||| ||||||| |||||| |||| ||||||||||| |   || ||||| |||||||||  |||||||||| ||||||||||    
T  16710104 tgaggaaatgggaaagtttagaggtgtatttatagggggagattgtaacgtaggttatatctaccataaatatagtcaaaaa 16710185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 42121714 - 42121758
Alignment:
Q  64 ggaagtttggaggggtatttataggtgtgaatggtaacataggtt 108  Q
    |||||| |||||||||||||||||||| ||||||||  |||||||    
T  42121714 ggaagtatggaggggtatttataggtgggaatggtagtataggtt 42121758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 43835187 - 43835279
Alignment:
Q  58 aaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagt-caaaaaacgtgtaaaagttgt 149  Q
    ||||||||||||||| |  |||||||||||||| ||||||||||||| ||| ||| ||| |||||||||||  ||||||||||||||| ||||    
T  43835187 aaatggggaagtttgcaaaggtatttataggtgagaatggtaacatatgttttaactacaataaatgtagtaaaaaaaacgtgtaaaacttgt 43835279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 28704222 - 28704141
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  |||||||||||  ||||| ||| | ||||||||||||| ||||    
T  28704222 gggaagtatggaggggtatttataggtgggaatggtagtataggttataaacaccattaatatggtcaaaaaacgtgaaaaa 28704141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 34471450 - 34471532
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||| |||| || |||| |||||||||||||||||||| ||||||||   ||||||||||  ||||||||||| |||||||||    
T  34471450 tgaggaaataggaaagtatggaggggtatttataggtgggaatggtagtgtaggttataaccaccataaatgtggtcaaaaaa 34471532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 43635488 - 43635411
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgt 140  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| ||||||||| ||||    
T  43635488 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtcaaaaaaagtgt 43635411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 43636566 - 43636475
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| ||| |||||||||| |||| ||||||||||| |   || |||||||||||||||  ||||||||||   ||||||||||||||||||    
T  43636566 tgaggaaaaggggaagtttagaggtgtatttatagggggagattgtaacataggttatatctaccataaatagggtcaaaaaacgtgtaaaa 43636475  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 23542610 - 23542691
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||| ||  ||| ||| ||| || ||| ||| | ||||||||||||||||||    
T  23542610 gggaagtatggaggggtatttataggtgggaatgatagtataagttgtaaatatcattaatatggtcaaaaaacgtgtaaaa 23542691  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 4639987 - 4639915
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    ||||||| |||||||||||||||||||| || |||||| ||||||| |||  ||||| ||||| || ||||||    
T  4639987 gggaagtatggaggggtatttataggtgggattggtaatataggttgtaaacaccatcaatgtggtaaaaaaa 4639915  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 10829689 - 10829626
Alignment:
Q  80 atttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaa 143  Q
    ||||||||||| ||||||||  ||||||||||| || ||| ||||| ||||||||| |||||||    
T  10829689 atttataggtgggaatggtagtataggttataaatatcattaatgtggtcaaaaaatgtgtaaa 10829626  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 1931578 - 1931485
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaa--aacgtgtaaaa 144  Q
    |||||||||| |||||||||||||  |||||||||| |   || |||||||||||||||  |||| ||||| |||| ||||  |||||||||||    
T  1931578 tgagaaaatgtggaagtttggaggtatatttatagggggagattgtaacataggttatatctaccgtaaatatagtaaaaaagaacgtgtaaaa 1931485  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 3964222 - 3964185
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtg 90  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  3964222 tgaggaaatgaggaagtttggaggggtatttataggtg 3964185  T

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Target: scaffold0223 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 15938 - 16020
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||| ||||| ||||||||| ||||||||||||||||| ||||||||  ||||||||||| |||||||| |||| | ||||||    
T  15938 tgaggaaatgaggaagtttgaaggggtatttataggtgggaatggtagtataggttataactaccataagtgtaataaaaaaa 16020  T

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Target: scaffold0861 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 3578 - 3658
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| ||| |||||| ||||| |||||||||| |||||||    
T  3578 gggaagtatggaggggtatttataggtg-gaatggtagtataggttttaaataccattaatgtggtcaaaaaacatgtaaaa 3658  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 16444646 - 16444565
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| || ||||||||||||||||| ||||||||  ||||||| |||  ||||| ||||| ||||||||||||||||||    
T  16444646 gggaagtatgaaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatgtggtcaaaaaacgtgtaaaa 16444565  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 35053686 - 35053605
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||| |||  ||||| ||| | ||||||||||||||||||    
T  35053686 gggaagtatggaggggtatttataggtgggaatggtagtataggttgtaaacaccattaatatggtcaaaaaacgtgtaaaa 35053605  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 13312819 - 13312728
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||||| || |||| |||||| ||||||||| ||| ||||||||   ||||||||||  | ||||||||| ||||||||||||||||||    
T  13312819 tgagaaaataggaaagtatggaggagtatttataagtgggaatggtagtttaggttataacaaacataaatgtggtcaaaaaacgtgtaaaa 13312728  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 14153733 - 14153652
Alignment:
Q  63 gggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||| |||||||||||||||||||| || |||||  ||||||| |||  ||||| ||||| ||||| ||||||||||||    
T  14153733 gggaagtatggaggggtatttataggtgggagtggtagtataggttgtaaacaccattaatgtggtcaagaaacgtgtaaaa 14153652  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 9400239 - 9400159
Alignment:
Q  64 ggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||||||||| ||||||||||| |   || |||||||||||||||  |||||||||| || | |||||||||||||||    
T  9400239 ggaagtttggaggagtatttatagggggagattgtaacataggttatatctaccataaatatactaaaaaaacgtgtaaaa 9400159  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 11718507 - 11718589
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaa 135  Q
    |||||||||  |||||| || ||||||||||||||||| ||||||||  ||| ||||||| |||||| ||||| || ||||||    
T  11718507 tgagaaaataaggaagtatgaaggggtatttataggtgagaatggtagtataagttataaataccattaatgtggtaaaaaaa 11718589  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 14830770 - 14830690
Alignment:
Q  64 ggaagtttggaggggtatttataggtgtgaatggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||||| |||||||||||||||||||| ||||| ||  |||| || |||  ||||| ||||| || |||||||||||||||    
T  14830770 ggaagtatggaggggtatttataggtgggaatgatattatagattgtaaacaccattaatgtggtaaaaaaacgtgtaaaa 14830690  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 35054812 - 35054725
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtga-atggtaacataggttataagtaccataaatgtagtcaaaaaacgtgt 140  Q
    |||| |||||||||||||| |||| ||||||||||| | || || |||||||||||||||  ||||||||||   || |||||||||||    
T  35054812 tgaggaaatggggaagtttagaggtgtatttatagg-gagagattgtaacataggttatatctaccataaataaggtaaaaaaacgtgt 35054725  T

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Target: scaffold1700 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1700
Description:

Target: scaffold1700; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 985 - 1076
Alignment:
Q  53 tgagaaaatggggaagtttggaggggtatttataggtgtga-atggtaacataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    |||| |||||||||||||| |||| ||||||||||| | || || |||||||||||||||  ||||||||||   || |||||||||||||||    
T  985 tgaggaaatggggaagtttagaggtgtatttatagg-gagagattgtaacataggttatatctaccataaatagggtaaaaaaacgtgtaaaa 1076  T

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Target: scaffold1455 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 75 - 116
Alignment:
Q  66 aagtttggaggggtatttataggtgtgaatggtaacataggt 107  Q
    |||| |||||||||||||||||||| ||||||||| ||||||    
T  75 aagtatggaggggtatttataggtgggaatggtaatataggt 116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 1332 - 1288
Alignment:
Q  100 acataggttataagtaccataaatgtagtcaaaaaacgtgtaaaa 144  Q
    ||||||||||||| |||  |||| |||||||||||||||||||||    
T  1332 acataggttataactacactaaacgtagtcaaaaaacgtgtaaaa 1288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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