View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_low_67 (Length: 327)
Name: NF15465_low_67
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_67 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 54460032 - 54460343
Alignment:
| Q |
1 |
tgagatggttgctgataatggtgtaagtataacaacatccgaaaatgagaagaagcttgtggagatgaatgctgataaggatataacagaatctaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54460032 |
tgagatggttgctgataatggtgtaagtataacaacatccgaaaatgagaagaagcttgtggagatgaatgctgataaggatataacagaatctaaaatt |
54460131 |
T |
|
| Q |
101 |
gaggagcagcttgtggagaaaagccaaaagataggtttttccgggtgtagaagtgacgctgcaaccgatgaagcatggaaggaaagtgcattggcaaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54460132 |
gaggagcagcttgtggagaaaagccaaaagataggtttttccgagtgtagaagtgacgctgcaaccgatgaagcatggaaggaaagtgcattggcaaaga |
54460231 |
T |
|
| Q |
201 |
ggaggaaggttggacgtttatggtgtgagcattgtcaaattggcgctttctcacaagctgtgatggaagaccatatgaaagggaaaaaacacctaaagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54460232 |
ggaggaaggttggacgtttatggtgtgagcattgtcaaattggcgctttctcacaagctgtgatggaagaccatatgaaagggaaaaaacacctaaagaa |
54460331 |
T |
|
| Q |
301 |
tatgaagaaact |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
54460332 |
tatgaagaaact |
54460343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 54459919 - 54460036
Alignment:
| Q |
2 |
gagatggttgctgataatggtgtaagtataacaacatccgaaaatgagaagaagcttgtggagatgaatgctgataaggatataacagaatctaaaattg |
101 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
54459919 |
gagatgatggctgataatggtgtaagtataacaacatccaaaaatgagaagaatcctgtggagatgaaggctgataagaatgtaacagaatctaaaattg |
54460018 |
T |
|
| Q |
102 |
aggagcagcttgtggaga |
119 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
54460019 |
aggagcagcttgttgaga |
54460036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 54059062 - 54059164
Alignment:
| Q |
206 |
aaggttggacgtttatggtgtgagcattgtcaaattggcgctttctcacaagctgtgatggaagaccatatgaaagggaaaaaacacctaaagaatatga |
305 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||||| || |||| ||| |||||||||||| |||| ||||||||||||||| | ||||| |||| |
|
|
| T |
54059062 |
aaggttggaggtttatggtgtgaactctgtcaaattggcactacctcaaaagttgtgatggaagagcataaaaaagggaaaaaacacattaagaaaatga |
54059161 |
T |
|
| Q |
306 |
aga |
308 |
Q |
| |
|
||| |
|
|
| T |
54059162 |
aga |
54059164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 300
Target Start/End: Complemental strand, 15037945 - 15037732
Alignment:
| Q |
84 |
taacagaatctaaaattgaggagcagcttgtggagaaaagccaaaagataggtttttccgggtgtagaagtgacgctgcaaccgatgaagcatggaagga |
183 |
Q |
| |
|
||||||||||||||| ||||||||| | || |||||||| |||||| ||| ||||| | | ||| || | |||||||| || |||||| ||||| |
|
|
| T |
15037945 |
taacagaatctaaaaatgaggagcaacatgcggagaaaaaccaaaatgtagatttttttgagagtaaaaaaggtgctgcaactgaggaagcagggaag-- |
15037848 |
T |
|
| Q |
184 |
aagtgcattggcaaagaggaggaaggttggacgtttatggtgtgagcattgtcaaattggcgctttctcacaagctgtgatggaagaccatatgaaaggg |
283 |
Q |
| |
|
||||||||| || | | || |||| | || ||||||||||||||| |||||||||||| | |||||||| |||||||||| ||||| |||||| |
|
|
| T |
15037847 |
-agtgcattgacagaaatgattaaggctagaggtttatggtgtgagctctgtcaaattggcaccaactcacaagttgtgatggaaaggcatataaaaggg |
15037749 |
T |
|
| Q |
284 |
aaaaaacacctaaagaa |
300 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
15037748 |
aaaaaacacataaagaa |
15037732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University