View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_69 (Length: 316)

Name: NF15465_low_69
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_69
NF15465_low_69
[»] scaffold0078 (3 HSPs)
scaffold0078 (104-305)||(1907-2108)
scaffold0078 (196-311)||(56542-56657)
scaffold0078 (196-311)||(21256-21371)
[»] chr7 (8 HSPs)
chr7 (192-311)||(16565651-16565770)
chr7 (192-311)||(16599892-16600011)
chr7 (104-168)||(16565554-16565619)
chr7 (104-168)||(16600043-16600108)
chr7 (1-39)||(16562991-16563029)
chr7 (1-39)||(16565454-16565492)
chr7 (1-39)||(16600170-16600208)
chr7 (1-39)||(16602633-16602671)
[»] scaffold0184 (1 HSPs)
scaffold0184 (196-311)||(16187-16302)


Alignment Details
Target: scaffold0078 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 104 - 305
Target Start/End: Original strand, 1907 - 2108
Alignment:
Q  104 ggcggagcaagtatttcacacgatattgatcaatactttcctatatataacctcgttcctatcccacnnnnnnnnnnnnnnnnnncaacttacaatggca 203  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |                  ||||| |||||||||    
T  1907 ggcggagcaagtatttcacacgatattaaccaattctttcctatatataacctcgttcctatccctcaaaaaagtaaagtaaaaacaactcacaatggca 2006  T
Q  204 aaaacaactcacatagctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatcatccaaattttc 303  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2007 aaagcaactcacattgctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatcatcaaaattttc 2106  T
Q  304 at 305  Q
    ||    
T  2107 at 2108  T

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Target: scaffold0078; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 196 - 311
Target Start/End: Original strand, 56542 - 56657
Alignment:
Q  196 caatggcaaaaacaactcacatagctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatcatcc 295  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||| |||||    
T  56542 caatggcaaaaacaattcacatagctgttattccaagtcctggtttcagccacttagtcccaatagttgaattctccaaaagattagttacaaaccatcc 56641  T
Q  296 aaattttcatctcact 311  Q
    |||||||||| |||||    
T  56642 aaattttcatgtcact 56657  T

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Target: scaffold0078; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 196 - 311
Target Start/End: Original strand, 21256 - 21371
Alignment:
Q  196 caatggcaaaaacaactcacatagctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatcatcc 295  Q
    ||||||||||||||| |||||||||||||||| |||| |||||||| |||||| ||| ||||||||| |||||| ||||||||||||||||||| || ||    
T  21256 caatggcaaaaacaattcacatagctgttattccaagtcctggttttagccacttagtcccaatagttgaattcaccaaaagattagtcacaaaccaccc 21355  T
Q  296 aaattttcatctcact 311  Q
    |||||||||| |||||    
T  21356 aaattttcatgtcact 21371  T

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Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 16565651 - 16565770
Alignment:
Q  192 cttacaatggcaaaaacaactcacatagctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatc 291  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16565651 cttacaatggcaaaaacaagtcacatagctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatc 16565750  T
Q  292 atccaaattttcatctcact 311  Q
    |||||||||||||| |||||    
T  16565751 atccaaattttcatgtcact 16565770  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 16600011 - 16599892
Alignment:
Q  192 cttacaatggcaaaaacaactcacatagctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatc 291  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16600011 cttacaatggcaaaaacaagtcacatagctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatc 16599912  T
Q  292 atccaaattttcatctcact 311  Q
    |||||||||||||| |||||    
T  16599911 atccaaattttcatgtcact 16599892  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 16565554 - 16565619
Alignment:
Q  104 ggcggagcaagtatttcacacgatattgatcaatactttcctatatat-aacctcgttcctatccc 168  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||    
T  16565554 ggcggagcaagtatttcacacgatattgaccaattctttcctatatataaatctcgttcctatccc 16565619  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 16600108 - 16600043
Alignment:
Q  104 ggcggagcaagtatttcacacgatattgatcaatactttcctatatat-aacctcgttcctatccc 168  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||    
T  16600108 ggcggagcaagtatttcacacgatattgaccaattctttcctatatataaatctcgttcctatccc 16600043  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16562991 - 16563029
Alignment:
Q  1 atttattttttcaaatttattgagtatcaaatgtatctg 39  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  16562991 atttatttttttaaatttattgtgtatcaaatgtatctg 16563029  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16565454 - 16565492
Alignment:
Q  1 atttattttttcaaatttattgagtatcaaatgtatctg 39  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  16565454 atttatttttttaaatttattgagtatcaaatatatctg 16565492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 16600208 - 16600170
Alignment:
Q  1 atttattttttcaaatttattgagtatcaaatgtatctg 39  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  16600208 atttatttttttaaatttattgagtatcaaatatatctg 16600170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 16602671 - 16602633
Alignment:
Q  1 atttattttttcaaatttattgagtatcaaatgtatctg 39  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  16602671 atttatttttttaaatttattgtgtatcaaatgtatctg 16602633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 16302 - 16187
Alignment:
Q  196 caatggcaaaaacaactcacatagctgttatttcaagccctggtttcagccacatagccccaatagtagaattctccaaaagattagtcacaaatcatcc 295  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||| |||||    
T  16302 caatggcaaaaacaattcacatagctgttattccaagtcctggtttcagccacttagtcccaatagttgaattctccaaaagattagttacaaaccatcc 16203  T
Q  296 aaattttcatctcact 311  Q
    |||||||||| |||||    
T  16202 aaattttcatgtcact 16187  T

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