View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_71 (Length: 304)
Name: NF15465_low_71
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 24563019 - 24563316
Alignment:
| Q |
1 |
agagcgtgagagcaacctcataattttnnnnnnnttgcacatgctttcgaaaataaacattataacaaagaaaaagtcgtgtttttgttcggaaatacac |
100 |
Q |
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| T |
24563019 |
agagcgtgagagcaacctcataattttaaaaaa-ttgcacatgctttcgaaaataaacattataacaaagaaaaagtcgtgtttttgttcggaaatacac |
24563117 |
T |
|
| Q |
101 |
atgcacacaagtaaaaactatgtcattttgtgtttgataagattaagtccctcatttttatatggttgaaggcgagattttttcaactcttatctttaac |
200 |
Q |
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| T |
24563118 |
atgcacacaagtaaaaactatgtcattttgtggttgataagattaagtcactcacttttatatggttgaagacgagattttttcaacttttctctttaac |
24563217 |
T |
|
| Q |
201 |
ttttatggctggtg-------ccgttcaccattttgaacatagactaatggttatttctgttttaatgttctttattgctctgtttccttgtaaatatt |
292 |
Q |
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|||||||||||||| |||||||||||| ||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24563218 |
ttttatggctggtggcttagtccgttcaccattctgagcatatgctaatggtaatttctgttttcatgttctttattgctctgtttccttgtaaatatt |
24563316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 4998034 - 4997990
Alignment:
| Q |
136 |
gataagattaagtccctcatttttatatggttgaaggcgagattt |
180 |
Q |
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| T |
4998034 |
gataagattaagtccctcacttttatgtggttgaaggcgaaattt |
4997990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 41156274 - 41156351
Alignment:
| Q |
215 |
ccgttcaccattttgaacatagactaatggttatttctgttttaatgttctttattgctctgtttccttgtaaatatt |
292 |
Q |
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| T |
41156274 |
ccgttcatcattatggacataggctaatagttatttctgttttactgttctttattgctctgtttccttgtaaatatt |
41156351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 34703575 - 34703534
Alignment:
| Q |
134 |
ttgataagattaagtccctcatttttatatggttgaaggcga |
175 |
Q |
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| T |
34703575 |
ttgataagattaagtccctcacttttatgtggttgaaggcga |
34703534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 44736063 - 44736027
Alignment:
| Q |
139 |
aagattaagtccctcatttttatatggttgaaggcga |
175 |
Q |
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| T |
44736063 |
aagattaagtccctcacttttatgtggttgaaggcga |
44736027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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