View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_72 (Length: 298)

Name: NF15465_low_72
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_72
NF15465_low_72
[»] chr2 (1 HSPs)
chr2 (15-298)||(43595692-43595975)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 43595975 - 43595692
Alignment:
Q  15 aatgtatattgttgggcttaaaacattcactgcagaaggaattgtagcaaaaagatttaaaatagaagacttgcctcgtgtataagaactgttgcatctc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43595975 aatgtatattgttgggcttaaaacattcactgcagaaggaattgtagcaaaaagatttaaaatagaagacttgcctcgtgtataagaactgttgcatctc 43595876  T
Q  115 gagatgcttttattagctctgggcaaggccttgtgtcaccagaatatacaatcttccaaccaggtatcacttttccaacactattaatcctcttttctgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43595875 gagatgcttttattagctctgggcaaggccttgtgtcaccagaatatacaatcttccaaccaggtatcacttttccaacactattaatcctcttttctgc 43595776  T
Q  215 ttctagaacaacaccatatgactgtgagcaatgtacaacgggaaaactaatcaaagtattgagaccagcttcctggattacccc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43595775 ttctagaacaacaccatatgactgtgagcaatgtacaacgggaaaactaatcaaagtattgagaccagcttcctggattacccc 43595692  T

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