View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_76 (Length: 290)
Name: NF15465_low_76
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_76 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 39825050 - 39825304
Alignment:
| Q |
1 |
caacttcactatgtgtctgtgttgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaatgtgttaaataattaactcatcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39825050 |
caacttcactatgtgtctgtgttgtgttcgatgtccttgtctctatcagcgtttcatagctagcaaacatactaatgtgttaaataattaattcatcata |
39825149 |
T |
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| Q |
101 |
ggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39825150 |
ggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggaca |
39825249 |
T |
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| Q |
201 |
aaattccttcaactaaaagaggatgacaaactaaaccacatgatgaaaatgatgc |
255 |
Q |
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| T |
39825250 |
aaattccttcaactaaaagaggatgacaaactaaaccacatgatgaaaatgatgc |
39825304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 39805013 - 39805267
Alignment:
| Q |
1 |
caacttcactatgtgtctgtgttgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaatgtgttaaataattaactcatcata |
100 |
Q |
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||||||||||| ||||| | ||||||||||||||||||| ||| |||| ||||||| |||||||||| |||||||||||||||| |||||||||||| | |
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| T |
39805013 |
caacttcactacgtgtcggcattgtgttcgatgtccttgtctctgtcagcgtttcattgctagcaaacttactaatgtgttaaatgattaactcatcaca |
39805112 |
T |
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| Q |
101 |
ggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggaca |
200 |
Q |
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| T |
39805113 |
ggtatcaggatcaaagttgatgaaattcttcacaaggaaaaatgagggtccaattgtacatgtgggccgttcacatgcaagttcttcaagcatatggaca |
39805212 |
T |
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| Q |
201 |
aaattccttcaactaaaagaggatgacaaactaaaccacatgatgaaaatgatgc |
255 |
Q |
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| T |
39805213 |
aaattccttcaactaaaagaggatgagaaactaaaccacatgaagaaaatgatgc |
39805267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 39813548 - 39813795
Alignment:
| Q |
8 |
actatgtgtctgtgttgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaatgtgttaaataattaactcatcataggtatca |
107 |
Q |
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| T |
39813548 |
actatgtgtcagtgccgtgttcgatgtttatgtctctcttagtgtttcataactagcaaacgtactaatgtgttaaataattaactcatcacaggtatca |
39813647 |
T |
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| Q |
108 |
ggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggacaaaattcc |
207 |
Q |
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| T |
39813648 |
ggatcagagttgaagaaattcttcacaaggaaacatgagggtccaattgtacatgtgggccattcacatgcaagtgcttcaagcatatggactaaattcc |
39813747 |
T |
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| Q |
208 |
ttcaactaaaagaggatgacaaactaaaccacatgatgaaaatgatgc |
255 |
Q |
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| T |
39813748 |
ttcaactaaaagaggatgacaaactaaaccacatgaagaaaatgatgc |
39813795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 39921318 - 39921572
Alignment:
| Q |
1 |
caacttcactatgtgtctgtgttgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaatgtgttaaataattaactcatcata |
100 |
Q |
| |
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||||||||||||||||| | || ||||||||||| || ||| ||||| |||||||| ||| |||| ||||||||||| ||||||||||||||| | |
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| T |
39921318 |
caacttcactatgtgtcggcgtcgtgttcgatgtttgtgcctctgtcagtatttcatagatagaaaactgactaatgtgtttaataattaactcatccca |
39921417 |
T |
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| Q |
101 |
ggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggaca |
200 |
Q |
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| T |
39921418 |
ggtatcaggatcagagttgagtaaattcttcacaaggaaacatgagggtccaattgtacatgtgggccgttcacatgcaagtgcttcaagcatatggact |
39921517 |
T |
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| Q |
201 |
aaattccttcaactaaaagaggatgacaaactaaaccacatgatgaaaatgatgc |
255 |
Q |
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| T |
39921518 |
aaattccttcaattaaaagaggaagagaaactacaccacatgaagaaaatgatgc |
39921572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 39909999 - 39910251
Alignment:
| Q |
1 |
caacttcactatgtgtctgtgttgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaatgtgttaaataattaactcatcata |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||| || ||| ||||| |||||||| ||| |||| |||||| |||| |||||||||||||||| | |
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| T |
39909999 |
caacttcactatgtgtcggtgttgagtttgatgtctgtgcctctgtcagtatttcatagatagaaaactgactaatatgtttaataattaactcatcaca |
39910098 |
T |
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| Q |
101 |
ggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggaca |
200 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |
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| T |
39910099 |
ggtatcaggatcagagttgagtaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccattcacatgcaagtgcttcaagcatatggact |
39910198 |
T |
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| Q |
201 |
aaattccttcaactaaaagaggatgacaaactaaaccacatgatgaaaatgat |
253 |
Q |
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|||||||||||||||||||||||||| ||| | | ||||||| ||||||||| |
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| T |
39910199 |
aaattccttcaactaaaagaggatgagaaattgcatcacatgaagaaaatgat |
39910251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 39882635 - 39882861
Alignment:
| Q |
2 |
aacttcactatgtgtctgtgttgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaa--tgtgttaaataattaactcatcat |
99 |
Q |
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| T |
39882635 |
aacttcactacgtgtctgcgttgtgttcgatgtttgtgtctctgtcagtatttcatagatagaaaactgatcaatgtgtgtttaataatttactcatcat |
39882734 |
T |
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| Q |
100 |
aggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggac |
199 |
Q |
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| T |
39882735 |
aggtatcaggatcagagttgatgaaattcttcacaaggaaaaatgagggtccaattgtacacgtgggcccttcacatgcaagtgcttcaagcatatggac |
39882834 |
T |
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| Q |
200 |
aaaattccttcaactaaaagaggatga |
226 |
Q |
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| T |
39882835 |
taaattccttcaactgaaagaggatga |
39882861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 39926705 - 39926860
Alignment:
| Q |
100 |
aggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggac |
199 |
Q |
| |
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|||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||| |
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| T |
39926705 |
aggtatcaggatcagagttgaagaaattattcacaaggaaacatgagggtccaattgtacacatgggccattcacatgcaagtgcttcaagcatatggac |
39926804 |
T |
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| Q |
200 |
aaaattccttcaactaaaagaggatgacaaactaaaccacatgatgaaaatgatgc |
255 |
Q |
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|||||||||||||||||||||||||| ||| | | ||||||| ||||||||||| |
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| T |
39926805 |
taaattccttcaactaaaagaggatgagaaattgcatcacatgaagaaaatgatgc |
39926860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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