View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_8 (Length: 676)

Name: NF15465_low_8
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_8
NF15465_low_8
[»] chr2 (9 HSPs)
chr2 (169-282)||(12892793-12892906)
chr2 (160-238)||(35494924-35495002)
chr2 (153-243)||(29927752-29927841)
chr2 (171-280)||(38283866-38283976)
chr2 (152-237)||(3257019-3257102)
chr2 (153-218)||(6069170-6069235)
chr2 (153-238)||(32619274-32619359)
chr2 (153-190)||(38342342-38342379)
chr2 (153-190)||(5357631-5357668)
[»] chr7 (8 HSPs)
chr7 (153-280)||(5038247-5038374)
chr7 (153-283)||(24972953-24973084)
chr7 (153-283)||(10472043-10472173)
chr7 (172-280)||(42940735-42940842)
chr7 (209-284)||(16984088-16984163)
chr7 (153-282)||(41639712-41639841)
chr7 (202-251)||(42082769-42082818)
chr7 (208-282)||(10065502-10065576)
[»] chr6 (7 HSPs)
chr6 (153-281)||(4332934-4333062)
chr6 (153-251)||(32549434-32549532)
chr6 (213-283)||(1054950-1055020)
chr6 (162-251)||(7385317-7385406)
chr6 (153-214)||(27176999-27177060)
chr6 (154-251)||(214766-214863)
chr6 (167-251)||(1038366-1038450)
[»] chr1 (7 HSPs)
chr1 (153-283)||(45962234-45962364)
chr1 (153-282)||(24122454-24122583)
chr1 (153-283)||(28650951-28651081)
chr1 (166-251)||(31507298-31507383)
chr1 (214-253)||(16313603-16313642)
chr1 (194-250)||(28190516-28190572)
chr1 (159-247)||(44686290-44686378)
[»] chr3 (5 HSPs)
chr3 (165-251)||(40362024-40362110)
chr3 (112-255)||(38215487-38215630)
chr3 (153-251)||(1699962-1700060)
chr3 (153-190)||(39028159-39028196)
chr3 (153-229)||(29570373-29570448)
[»] chr5 (4 HSPs)
chr5 (154-283)||(30393192-30393321)
chr5 (153-195)||(36563308-36563350)
chr5 (153-218)||(9379243-9379308)
chr5 (153-190)||(10315750-10315787)
[»] chr8 (7 HSPs)
chr8 (161-237)||(37973412-37973488)
chr8 (164-284)||(951334-951454)
chr8 (153-237)||(9261246-9261330)
chr8 (159-281)||(32703252-32703374)
chr8 (153-251)||(37165152-37165250)
chr8 (153-205)||(31645146-31645198)
chr8 (153-189)||(40832946-40832982)
[»] scaffold1107 (1 HSPs)
scaffold1107 (153-282)||(1251-1376)
[»] chr4 (5 HSPs)
chr4 (153-251)||(19401727-19401825)
chr4 (153-251)||(47533761-47533859)
chr4 (152-251)||(53711714-53711812)
chr4 (167-256)||(55520963-55521052)
chr4 (153-251)||(30027475-30027573)
[»] scaffold0067 (1 HSPs)
scaffold0067 (153-282)||(15312-15438)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 12892906 - 12892793
Alignment:
Q  169 ttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaactttatgcaaagtgta 268  Q
    |||| |||| |||||||||||| ||||||| |||||| |||| |||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||    
T  12892906 ttaagtgtcaatgaattttaaccgacggtagttaactgtcgacgaaaattggggttaaatttatcatttcatagtgtttcttaactttctgcaaagtgta 12892807  T
Q  269 aacaacaattttca 282  Q
    ||||||||||||||    
T  12892806 aacaacaattttca 12892793  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 35495002 - 35494924
Alignment:
Q  160 catcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttc 238  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||| |||||||| |||||||    
T  35495002 catcggcagttaactgccgatgaattttaaccgatggtaattaactatcgatgaaatttgagattaaatttgtcatttc 35494924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 29927752 - 29927841
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggt 243  Q
    |||||||||||||||||||||||  |||| |||||||| |||| || ||||||  |||||||| ||| |||||||||||||||||| ||||    
T  29927752 ataacctcatcggcagttaactgctgatggattttaaccgacgatagttaact-ccgatgaaatttggggttaaatttatcatttcatggt 29927841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 38283976 - 38283866
Alignment:
Q  171 aactgtcgatgaattttaactgacggtaattaactatcgatgaaaa-ttgaggttaaatttatcatttcgtggtgtttcttaactttatgcaaagtgtaa 269  Q
    |||| |||||||||||||||  |||||| ||||||  ||| ||||| |||||||||| ||| ||||||  |||||||||||||| || |  | |||||||    
T  38283976 aactttcgatgaattttaaccaacggtagttaactgccgaagaaaaattgaggttaagtttgtcattttatggtgtttcttaacctttttaagagtgtaa 38283877  T
Q  270 acaacaatttt 280  Q
    |||||||||||    
T  38283876 acaacaatttt 38283866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 3257019 - 3257102
Alignment:
Q  152 cataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcattt 237  Q
    |||||||||||||||| |||| || | ||||||||||||||  |||| ||||||| ||||||||| ||||||||||||||| ||||    
T  3257019 cataacctcatcggcaattaattgccaatgaattttaactg-tggtagttaactaccgatgaaaa-tgaggttaaatttattattt 3257102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 6069235 - 6069170
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaatt 218  Q
    |||| ||||||| |||||||||| |||||||||||||| ||||||||||||||  |||| ||||||    
T  6069235 ataatctcatcgacagttaactgccgatgaattttaaccgacggtaattaactgccgataaaaatt 6069170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 32619274 - 32619359
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttc 238  Q
    |||| ||||||||||||||| |  |||||||||||||| ||  ||  ||||||  |||||||||||||| ||||||||||||||||    
T  32619274 ataatctcatcggcagttaattaccgatgaattttaaccgaaagtgcttaactgccgatgaaaattgagattaaatttatcatttc 32619359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 38342379 - 38342342
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaac 190  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  38342379 ataacctcatcggcagttaactgtctatgaattttaac 38342342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 5357668 - 5357631
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaac 190  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  5357668 ataacctcatcggcagttaactgtcgatggaatttaac 5357631  T

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Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 153 - 280
Target Start/End: Complemental strand, 5038374 - 5038247
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaa 252  Q
    ||||| ||||||||||||||||| ||||| ||||||||    |||| |||||| ||||||  |||||| ||||||||| ||||||| |||||||||||||    
T  5038374 ataacttcatcggcagttaactgacgatggattttaacccgtggtagttaactgtcgatggtaattgaagttaaatttttcatttcatggtgtttcttaa 5038275  T
Q  253 ctttatgcaaagtgtaaacaacaatttt 280  Q
    |||| |||||||||||||||||||||||    
T  5038274 ctttgtgcaaagtgtaaacaacaatttt 5038247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 24972953 - 24973084
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgttt-ctta 251  Q
    ||||| |||||| |||||||||| ||||| |||||||| | ||||| ||||||||||||| ||||||  ||||||||| ||||||| |||||||| ||||    
T  24972953 ataacatcatcgacagttaactgccgatggattttaaccggcggtagttaactatcgatggaaattggagttaaatttgtcatttcatggtgtttcctta 24973052  T
Q  252 actttatgcaaagtgtaaacaacaattttcaa 283  Q
     |||  ||||||||||||||||||||||||||    
T  24973053 gcttggtgcaaagtgtaaacaacaattttcaa 24973084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 10472043 - 10472173
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaa 252  Q
    |||||| ||| | ||||||| |||||| |||||||||| ||| | | |||| ||| |||| ||||||||||||||||| ||||||  || ||||||||||    
T  10472043 ataaccgcattgacagttaattgtcgaagaattttaaccgacagcagttaattattgatggaaattgaggttaaatttgtcatttgatgatgtttcttaa 10472142  T
Q  253 ctttatgcaaagtgtaaacaacaattttcaa 283  Q
    | || | ||| |||||||||||||| |||||    
T  10472143 ccttgttcaaggtgtaaacaacaatgttcaa 10472173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 172 - 280
Target Start/End: Original strand, 42940735 - 42940842
Alignment:
Q  172 actgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaactttatgcaaagtgtaaac 271  Q
    ||||||||||||| ||||  | ||||| |||||| |||||| ||||||| ||||||||| | ||||| |||||||||||| | || ||||||||||||||    
T  42940735 actgtcgatgaatgttaatcg-cggtagttaactgtcgatggaaattgaagttaaatttgttatttcatggtgtttcttatccttgtgcaaagtgtaaac 42940833  T
Q  272 aacaatttt 280  Q
    | |||||||    
T  42940834 agcaatttt 42940842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 16984163 - 16984088
Alignment:
Q  209 gatgaaaattgaggttaaatttatcatttcgtggtgtttcttaactttatgcaaagtgtaaacaacaattttcaac 284  Q
    |||||||||||||||||||||| ||||||| ||||| |||||| |||| ||| |||||||| || |||||||||||    
T  16984163 gatgaaaattgaggttaaatttgtcatttcatggtgcttcttagctttgtgctaagtgtaaccagcaattttcaac 16984088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 153 - 282
Target Start/End: Original strand, 41639712 - 41639841
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaa 252  Q
    |||| |||||||||||||||| ||||||  | |||||| || |||| |||||| |||||| |||||| |||||||||| ||||||  |||| ||| |||     
T  41639712 ataatctcatcggcagttaacggtcgatcgagtttaaccgatggtagttaactgtcgatggaaattggggttaaatttgtcattttatggtcttttttag 41639811  T
Q  253 ctttatgcaaagtgtaaacaacaattttca 282  Q
    ||||      ||||||||||||||||||||    
T  41639812 ctttgcttgtagtgtaaacaacaattttca 41639841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 42082818 - 42082769
Alignment:
Q  202 aactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    |||| ||||||||| |||||||||||||| ||||||| ||||||||||||    
T  42082818 aactgtcgatgaaatttgaggttaaatttgtcatttcatggtgtttctta 42082769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 10065502 - 10065576
Alignment:
Q  208 cgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaactttatgcaaagtgtaaacaacaattttca 282  Q
    ||||||||||||| ||||||||||||||||  | || ||||| ||| || | ||| |||||||||||||| ||||    
T  10065502 cgatgaaaattgaagttaaatttatcattttatagtatttctcaacattgttcaaggtgtaaacaacaatgttca 10065576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 153 - 281
Target Start/End: Complemental strand, 4333062 - 4332934
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaa 252  Q
    ||||| ||||||| |||||||||||||||||||||||| ||   |||||||||| ||||||||||||| ||||||||| | ||||  ||||||||||||     
T  4333062 ataacttcatcgggagttaactgtcgatgaattttaaccgataataattaactaccgatgaaaattgacgttaaatttgttatttaatggtgtttcttag 4332963  T
Q  253 ctttatgcaaagtgtaaacaacaattttc 281  Q
    | || || | |||||||||||||||||||    
T  4332962 ccttctgaatagtgtaaacaacaattttc 4332934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 32549532 - 32549434
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    ||||| |||||| || ||||||| |||||||||||||| |||| || ||||||| |||||||| ||| ||||||| || ||||||  ||||||||||||    
T  32549532 ataacttcatcgacaattaactgccgatgaattttaaccgacgatagttaactaccgatgaaatttggggttaaacttgtcatttaatggtgtttctta 32549434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 1055020 - 1054950
Alignment:
Q  213 aaaattgaggttaaatttatcatttcgtggtgtttcttaactttatgcaaagtgtaaacaacaattttcaa 283  Q
    ||||||| | |||||||| ||||||| || ||||| |||| |||||||||| |||||||||||||||||||    
T  1055020 aaaattgggattaaatttgtcatttcatgatgttttttaattttatgcaaaatgtaaacaacaattttcaa 1054950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 7385406 - 7385317
Alignment:
Q  162 tcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    ||||||||||||||  ||||  ||||||| | ||| | ||||||||||||| || | ||||||||| |||||||||  ||||||||||||    
T  7385406 tcggcagttaactgatgatgggttttaaccggcggcagttaactatcgatgtaattcgaggttaaaattatcatttgctggtgtttctta 7385317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 27176999 - 27177060
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaa 214  Q
    |||||||||||||||||||||| ||||||||||||||  | ||| | |||||| ||||||||    
T  27176999 ataacctcatcggcagttaactatcgatgaattttaatcggcggcagttaactgtcgatgaa 27177060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 214863 - 214766
Alignment:
Q  154 taacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    ||||| || ||||||||||| | || ||||||||||| || ||||  |||||| ||||| || |||| ||||||||| ||||||| |  |||||||||    
T  214863 taaccccaacggcagttaaccgccgttgaattttaaccgatggtagctaactaccgatgtaatttgaagttaaatttgtcatttcataatgtttctta 214766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 1038366 - 1038450
Alignment:
Q  167 agttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    ||||||||| |||||||||||| | ||||||| |||| | | |||| || |||| ||||||||||| || || || |||||||||    
T  1038366 agttaactgccgatgaattttatccgacggtagttaattgttgatggaatttgaagttaaatttatgatatcatgatgtttctta 1038450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 45962234 - 45962364
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaa 252  Q
    ||||||||||||  | ||||||| |||| ||||||||| | ||||  ||||||  | |||||||| || |||||||||| ||||||  | ||||||||||    
T  45962234 ataacctcatcgataattaactgccgataaattttaaccggcggtcgttaactgcccatgaaaatcgaagttaaatttaccatttcacgatgtttcttaa 45962333  T
Q  253 ctttatgcaaagtgtaaacaacaattttcaa 283  Q
    |||| ||||||||||||||||||||||||||    
T  45962334 ctttgtgcaaagtgtaaacaacaattttcaa 45962364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 153 - 282
Target Start/End: Original strand, 24122454 - 24122583
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaa 252  Q
    |||||||||||| |||||||||   ||||||| ||||| || | || |||| |||| |||||||||||| |||||||| | ||||  |||||||||||||    
T  24122454 ataacctcatcgacagttaactactgatgaatgttaaccgatgatagttaaatatcaatgaaaattgagattaaatttgttattttatggtgtttcttaa 24122553  T
Q  253 ctttatgcaaagtgtaaacaacaattttca 282  Q
    | ||||| |||||||||||| |||||||||    
T  24122554 ccttatgaaaagtgtaaacatcaattttca 24122583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 28651081 - 28650951
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaa 252  Q
    |||| ||||| | |||||||||| ||||| |||||||| |||||||||||| |   |||||||||||||||||||||||  ||||  |||| |||||||     
T  28651081 ataatctcattgacagttaactgccgatggattttaaccgacggtaattaattgctgatgaaaattgaggttaaatttactattttatggtctttcttag 28650982  T
Q  253 ctttatgcaaagtgtaaacaacaattttcaa 283  Q
    |||| |    |||||||||||||||||||||    
T  28650981 ctttgtttgtagtgtaaacaacaattttcaa 28650951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 31507298 - 31507383
Alignment:
Q  166 cagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    |||||||||| || ||||||||||| || | || ||||||| ||||  || || |||||||| |||||||||| ||||||||||||    
T  31507298 cagttaactgccgttgaattttaaccgatgatagttaactaccgatagaatttaaggttaaacttatcatttcatggtgtttctta 31507383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 16313603 - 16313642
Alignment:
Q  214 aaattgaggttaaatttatcatttcgtggtgtttcttaac 253  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  16313603 aaattgaggttaaatttctcatttcatggtgtttcttaac 16313642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 28190572 - 28190516
Alignment:
Q  194 cggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctt 250  Q
    ||||| |||||||  ||||||| ||||||||||| || ||||||| |||||||||||    
T  28190572 cggtagttaactactgatgaaatttgaggttaaacttgtcatttcatggtgtttctt 28190516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 44686290 - 44686378
Alignment:
Q  159 tcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgttt 247  Q
    |||||| |||||||||| |||||||||||||| |   ||||||||||  ||| ||||||||  ||||||||| | ||||  ||||||||    
T  44686290 tcatcgacagttaactgccgatgaattttaaccggatgtaattaactgccgaagaaaattggagttaaatttgttattttatggtgttt 44686378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 40362024 - 40362110
Alignment:
Q  165 gcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||| |||||| ||| |||||||||| ||||||  ||||||||||||    
T  40362024 gcagttaactgtcgatggattttaaccgacggtagttaactatcaatgaaatttggggttaaatttttcattttatggtgtttctta 40362110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 112 - 255
Target Start/End: Complemental strand, 38215630 - 38215487
Alignment:
Q  112 gaaaattgatgttcccacagaaaaggagtttaggaaacaccataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgat 211  Q
    ||||| |||||||||||||  |||||| | ||||||| ||||  |  | ||| |||||||||||||||||  ||||||| || |||| ||||||   |||    
T  38215630 gaaaaatgatgttcccacatcaaaggattctaggaaaaaccacgaatttatcagcagttaactgtcgatggtttttaacggatggtagttaactgctgat 38215531  T
Q  212 gaaaattgaggttaaatttatcatttcgtggtgtttcttaactt 255  Q
      |||||||||||||||||||| |||| ||||||||||||||||    
T  38215530 agaaattgaggttaaatttatcgtttcatggtgtttcttaactt 38215487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 1700060 - 1699962
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    |||| |||| ||||||||||||||| ||| |||||||||||||||| |||||   ||||| || |||||||||||||| | ||||| ||||||||||||    
T  1700060 ataatctcaccggcagttaactgtcaatggattttaactgacggtagttaacggccgatggaatttgaggttaaatttgttatttcatggtgtttctta 1699962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 39028159 - 39028196
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaac 190  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  39028159 ataaccttatcggcaattaactgtcgatgaattttaac 39028196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 29570373 - 29570448
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatt 229  Q
    |||||||||||||||||||||||  |||| |||||||| | ||||| ||| ||  ||| |||||||| |||||||||    
T  29570373 ataacctcatcggcagttaactgctgatggattttaaccggcggtagttagctgccgaagaaaattg-ggttaaatt 29570448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 154 - 283
Target Start/End: Original strand, 30393192 - 30393321
Alignment:
Q  154 taacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaac 253  Q
    ||||||||||  |||||||||| ||||| || |||||  | |||| |||||  |||||||||||||  ||||||||   |||||  |||| |||||||||    
T  30393192 taacctcatcaacagttaactgccgatggatattaaccaatggtagttaaccgtcgatgaaaattggtgttaaattcgccattttatggtatttcttaac 30393291  T
Q  254 tttatgcaaagtgtaaacaacaattttcaa 283  Q
    ||| ||||||||||||||||||||||||||    
T  30393292 tttgtgcaaagtgtaaacaacaattttcaa 30393321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 36563350 - 36563308
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacg 195  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  36563350 ataacctcatcggcagttaactgtcgatgagttttaaccgacg 36563308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 9379243 - 9379308
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaatt 218  Q
    ||||| |||||||  ||||||||||||||||||||||| | ||| | |||| ||||||||| ||||    
T  9379243 ataacttcatcggttgttaactgtcgatgaattttaaccggcggcagttaattatcgatgagaatt 9379308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 10315750 - 10315787
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaac 190  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  10315750 ataacctcatcggcagttaactgccgataaattttaac 10315787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 37973488 - 37973412
Alignment:
Q  161 atcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcattt 237  Q
    |||||||||||||||||||||||||||||| ||||||| | ||||   || ||||||||||||||||||||||||||    
T  37973488 atcggcagttaactgtcgatgaattttaaccgacggtagtcaactgctgaagaaaattgaggttaaatttatcattt 37973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 951334 - 951454
Alignment:
Q  164 ggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaactttatgcaaa 263  Q
    |||||||||||| || ||||||||||| ||| ||| |||||||||||| ||| || || |||||||| | ||||| | |||||||||| |||  ||  ||    
T  951334 ggcagttaactgccgctgaattttaaccgacagtagttaactatcgataaaatttaagattaaatttgttatttcatagtgtttcttagcttcgtgtgaa 951433  T
Q  264 gtgtaaacaacaattttcaac 284  Q
    ||| ||| |||||||||||||    
T  951434 gtggaaaaaacaattttcaac 951454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 9261330 - 9261246
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcattt 237  Q
    ||||||||||| ||  ||||||||| |||||||||||| | |  |||||||||  ||| |||||||| |||||||||||||||||    
T  9261330 ataacctcatcagcctttaactgtcaatgaattttaaccggccctaattaactgccgaagaaaattggggttaaatttatcattt 9261246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 281
Target Start/End: Original strand, 32703252 - 32703374
Alignment:
Q  159 tcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaactttat 258  Q
    ||||||| ||||||||| ||||  |||||||| ||| ||| |||||| || || |||||||  ||||||||||||||||| || | ||||||| | || |    
T  32703252 tcatcggtagttaactgccgatagattttaaccgacagtagttaactgtcaataaaaattggcgttaaatttatcatttcatgatttttcttagcattgt 32703351  T
Q  259 gcaaagtgtaaacaacaattttc 281  Q
        |||||||||||||||||||    
T  32703352 ttgtagtgtaaacaacaattttc 32703374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 37165250 - 37165152
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    |||| |||||||||| ||||||| |||||  ||||||| | ||||||||||||  ||| ||||| || | |||||||| ||||||  || |||||||||    
T  37165250 ataatctcatcggcaattaactgacgatgggttttaaccggcggtaattaactgccgaagaaaaatgggattaaatttgtcattttatgatgtttctta 37165152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 31645146 - 31645198
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaact 205  Q
    ||||||||||||||| ||||||| ||||| |||||||| ||||| | ||||||    
T  31645146 ataacctcatcggcacttaactgccgatggattttaaccgacggcagttaact 31645198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 40832946 - 40832982
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaa 189  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  40832946 ataacctcatcggtagttacctgtcgatgaattttaa 40832982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 153 - 282
Target Start/End: Original strand, 1251 - 1376
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaa 252  Q
    |||||||||||| | |||||||| ||| ||||||||||||  |||| ||||||   ||||||| |||||||||||||| ||||||| |||||||||||||    
T  1251 ataacctcatcgactgttaactgccgacgaattttaactgctggtagttaact---gatgaaa-ttgaggttaaatttgtcatttcatggtgtttcttaa 1346  T
Q  253 ctttatgcaaagtgtaaacaacaattttca 282  Q
    |||| |    ||||| ||||||||||||||    
T  1347 ctttgtctgtagtgttaacaacaattttca 1376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 19401727 - 19401825
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    |||||||||||| || ||||||| ||||  |||||||| ||||||| ||||||  ||| |||||||| |||||||||||||||||  ||||||||||||    
T  19401727 ataacctcatcgacaattaactgccgatagattttaaccgacggtagttaactgccgaagaaaattggggttaaatttatcattttatggtgtttctta 19401825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 47533761 - 47533859
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    ||||| |||||| ||||| |||| ||||||||||| |||| ||||| ||||| | |||||||| |||||||||||||||||||||  | ||||||||||    
T  47533761 ataacttcatcgacagttgactgccgatgaattttgactggcggtagttaacgaccgatgaaatttgaggttaaatttatcatttaattgtgtttctta 47533859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 53711812 - 53711714
Alignment:
Q  152 cataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    ||||| ||||| ||||||||||||| |||||||||||||   || |||||||||| | |||||| || ||||||||||| ||||||| | ||||||||||    
T  53711812 cataatctcatgggcagttaactgttgatgaattttaaccagcgataattaactaacaatgaaatttaaggttaaatttgtcatttcat-gtgtttctta 53711714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 55521052 - 55520963
Alignment:
Q  167 agttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaacttt 256  Q
    ||||||||| |||||||||||||||  ||||| |||||||| |||| || ||| || |||| || ||||||| |||||||||||| ||||    
T  55521052 agttaactgccgatgaattttaacttgcggtatttaactattgatgtaatttggggctaaacttgtcatttcatggtgtttcttagcttt 55520963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 30027475 - 30027573
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttctta 251  Q
    ||||||| |||  |||||| |||| ||||  ||||||| ||| ||| |||||||||||  |||||||||||||||||  ||||||  |||| |||||||    
T  30027475 ataacctaatcaacagttagctgtggatgggttttaaccgacagtagttaactatcgaaaaaaattgaggttaaattcgtcattttatggtatttctta 30027573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 282
Target Start/End: Original strand, 15312 - 15438
Alignment:
Q  153 ataacctcatcggcagttaactgtcgatgaattttaactgacggtaattaactatcgatgaaaattgaggttaaatttatcatttcgtggtgtttcttaa 252  Q
    |||||||||||| | |||||||| ||| |||||||||| |  |||| ||||||   ||||||||||| |||||||||| ||||||| ||||||||||||     
T  15312 ataacctcatcgactgttaactgccgacgaattttaaccggtggtagttaact---gatgaaaattggggttaaatttgtcatttcatggtgtttcttag 15408  T
Q  253 ctttatgcaaagtgtaaacaacaattttca 282  Q
    |||| |    ||||| ||||||||||||||    
T  15409 ctttgtctgtagtgttaacaacaattttca 15438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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