View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15465_low_81 (Length: 280)
Name: NF15465_low_81
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_81 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 17878610 - 17878860
Alignment:
| Q |
20 |
acaccaaacgctacggccactgcaactgtaatatgatgcgaagataaaaccattaaacaaaaagagagaaactcatggaccatgacacaacccaaaattt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17878610 |
acaccaaacgctacggccactgcaactgtagtatgatgcgaagataaaaccattaaacaaaaagagagaaactcatggaccatgacacaacccaaaattt |
17878709 |
T |
|
| Q |
120 |
aaacaggttaataggctcgttttatttagcacatataagattgaaaaactctaatatacaaagtcaaaaggaacttaacgaacaactaacaagtaaaatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17878710 |
aaacaggttaataggctcgttttatttagcacatataagattgaaaaactctaatatacaaagtcaaaaggaacttaatgaacaactaacaagtaaaatc |
17878809 |
T |
|
| Q |
220 |
tgaaattgatatacctgaaacaaactgaagagatccttttatgagcctatg |
270 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17878810 |
taaaattgatatacctgaaacaaactgaagagatccttttatgagcctatg |
17878860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 15046092 - 15046199
Alignment:
| Q |
109 |
acccaaaatttaaacaggttaataggctcgttttattta----gcacatataagattgaaaaactctaatatacaaagtcaaaaggaacttaacgaacaa |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| | || | ||||||||||| |||||||||||||||||||||| |||| || ||| |
|
|
| T |
15046092 |
acccaaaatttaaactggttaataggctcattttatttacttagatcacacaagattgaaaa----taatatacaaagtcaaaaggaatttaatgagcaa |
15046187 |
T |
|
| Q |
205 |
ctaacaagtaaa |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15046188 |
ctaacaagtaaa |
15046199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 14772009 - 14772090
Alignment:
| Q |
157 |
agattgaaaaactctaatatacaaagtcaaaaggaacttaacgaacaactaacaagtaaaatctgaaattgatatacctgaa |
238 |
Q |
| |
|
||||| || |||| ||||||||||||| |||||||||||||||||||| |||||||| || |||| ||||||||||||| |
|
|
| T |
14772009 |
agatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaa |
14772090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 15045833 - 15045878
Alignment:
| Q |
35 |
gccactgcaactgtaatatgatgcgaagataaaaccattaaacaaa |
80 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
15045833 |
gccactacagctgtaatatgatgcgatgataaaatcattaaacaaa |
15045878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University