View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_82 (Length: 279)
Name: NF15465_low_82
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 43288274 - 43288020
Alignment:
| Q |
18 |
actttacccgtatatatatgtgatata----cttttttctttaattttattaaattaaagtgcagcatcactaatctataagtgattctttaactttgat |
113 |
Q |
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| T |
43288274 |
actttacccgtatatatatgtgatatatatacttttttctttaattttattaaattaaagtgcagcatcactaatctataagtgattctttaactttgat |
43288175 |
T |
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| Q |
114 |
ttttctcattttggtagtaaaaacatgaaccatgactgaatgaaagaaacgggttcacttcaattaataaatttaaaagcatatgccattgtgaaggaaa |
213 |
Q |
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| T |
43288174 |
ttttctcattttggtagtaaaaacatgaaccatgactgaatgaaagaaacgggttcacttcaattaataaatttaaaagcatatgccattgtgaaggaaa |
43288075 |
T |
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| Q |
214 |
ggaacttctatcaaagtaggaaatatatatttaacctttctttggctatccctat |
268 |
Q |
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| T |
43288074 |
ggaacttctatcaaagtaggaaatatatatttaacctttctttggctatccctat |
43288020 |
T |
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