View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15465_low_84 (Length: 277)

Name: NF15465_low_84
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15465_low_84
NF15465_low_84
[»] chr8 (6 HSPs)
chr8 (19-183)||(15847775-15847937)
chr8 (54-100)||(2666185-2666231)
chr8 (55-101)||(6038292-6038338)
chr8 (55-117)||(13286129-13286191)
chr8 (55-105)||(44293573-44293623)
chr8 (57-101)||(574384-574428)
[»] chr4 (6 HSPs)
chr4 (55-103)||(12712033-12712081)
chr4 (55-96)||(14136089-14136130)
chr4 (56-101)||(21266899-21266944)
chr4 (83-119)||(9170214-9170250)
chr4 (57-97)||(27871399-27871439)
chr4 (57-97)||(42756127-42756167)
[»] chr2 (5 HSPs)
chr2 (57-105)||(7792281-7792329)
chr2 (55-97)||(22571886-22571928)
chr2 (57-101)||(5028856-5028900)
chr2 (56-96)||(9459079-9459119)
chr2 (56-104)||(39068722-39068770)
[»] chr7 (3 HSPs)
chr7 (63-114)||(955968-956019)
chr7 (63-115)||(25246777-25246830)
chr7 (57-106)||(34885874-34885923)
[»] chr3 (3 HSPs)
chr3 (62-117)||(31138422-31138477)
chr3 (55-97)||(4216420-4216462)
chr3 (57-101)||(1501450-1501494)
[»] scaffold0350 (1 HSPs)
scaffold0350 (55-101)||(1246-1292)
[»] scaffold0011 (1 HSPs)
scaffold0011 (63-101)||(189989-190027)
[»] chr6 (3 HSPs)
chr6 (56-97)||(4450261-4450302)
chr6 (56-101)||(6470633-6470678)
chr6 (55-119)||(8810638-8810702)
[»] chr1 (1 HSPs)
chr1 (58-103)||(28979291-28979336)
[»] scaffold0896 (1 HSPs)
scaffold0896 (55-119)||(3139-3203)
[»] chr5 (3 HSPs)
chr5 (55-103)||(17230384-17230432)
chr5 (56-100)||(18697749-18697793)
chr5 (56-104)||(22394034-22394082)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 15847937 - 15847775
Alignment:
Q  19 aggaaagagaagtgtaattcaagtat-tttattttaatcgtgaacttagctcatttgatgaagacaatgcataatatatgtaagatctcgg-ttcaaacc 116  Q
    |||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||     |||||||  ||||||||||| |||| |||    
T  15847937 aggaaagagaagcgtaattcaagtatctttattttaatcgtgagcttagctcatttgatgaagaca-----taatatagataagatctcggattcacacc 15847843  T
Q  117 cgatcga-aaaaatatctcagtacaataccgacatgaaaaagaaacttccgcagatatccgtccaaaa 183  Q
     |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15847842 agatcgagaaaaaaatctcagtacaataccgacatgaaaaagaatcttccgcagatatccgtccaaaa 15847775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 2666231 - 2666185
Alignment:
Q  54 atcgtgaacttagctcatttgatgaagacaatgcataatatatgtaa 100  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  2666231 atcgtgaacttagctcagttgataaagacaatgcgtaatatatgtaa 2666185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 6038338 - 6038292
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatatgtaag 101  Q
    |||||||||||||||| |||||   ||||||||||||||||||||||    
T  6038338 tcgtgaacttagctcagttgatatggacaatgcataatatatgtaag 6038292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 13286129 - 13286191
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatatgtaagatctcggttcaaaccc 117  Q
    |||||| ||||||||| ||| |  ||||||||||||||||||| ||||||  |||||||||||    
T  13286129 tcgtgagcttagctcagttggtatagacaatgcataatatatgcaagatccgggttcaaaccc 13286191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 44293573 - 44293623
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatatgtaagatct 105  Q
    |||||| ||||||||| ||| |  |||||||||||||||||||||||||||    
T  44293573 tcgtgagcttagctcagttggtatagacaatgcataatatatgtaagatct 44293623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 574384 - 574428
Alignment:
Q  57 gtgaacttagctcatttgatgaagacaatgcataatatatgtaag 101  Q
    |||| ||||||||| |||||  |||||||||||||||||||||||    
T  574384 gtgagcttagctcagttgatatagacaatgcataatatatgtaag 574428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 12712081 - 12712033
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatatgtaagat 103  Q
    ||||||||||| ||||||||||  ||||||||||||||||||| |||||    
T  12712081 tcgtgaacttaactcatttgatagagacaatgcataatatatgcaagat 12712033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 14136089 - 14136130
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatat 96  Q
    |||||| ||||||||| ||||| |||||||||||||||||||    
T  14136089 tcgtgagcttagctcagttgataaagacaatgcataatatat 14136130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 21266944 - 21266899
Alignment:
Q  56 cgtgaacttagctcatttgatgaagacaatgcataatatatgtaag 101  Q
    ||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  21266944 cgtgagcttagctcaattgttaaagacaatgcataatatatgtaag 21266899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 9170250 - 9170214
Alignment:
Q  83 aatgcataatatatgtaagatctcggttcaaacccga 119  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  9170250 aatgcataatatatgtaagatctgggttcaaccccga 9170214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 27871439 - 27871399
Alignment:
Q  57 gtgaacttagctcatttgatgaagacaatgcataatatatg 97  Q
    ||||||||||||||||||||  |||||||| ||||||||||    
T  27871439 gtgaacttagctcatttgatagagacaatgtataatatatg 27871399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 42756167 - 42756127
Alignment:
Q  57 gtgaacttagctcatttgatgaagacaatgcataatatatg 97  Q
    |||||||||||||| ||||| | ||||||||||||||||||    
T  42756167 gtgaacttagctcagttgataaggacaatgcataatatatg 42756127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 7792281 - 7792329
Alignment:
Q  57 gtgaacttagctcatttgatgaagacaatgcataatatatgtaagatct 105  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||| ||||    
T  7792281 gtgaatttagctcaattgataaagacaatgcataatatatgtaaaatct 7792329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 22571928 - 22571886
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatatg 97  Q
    |||||||||||||||| |||||  |||||||||||||||||||    
T  22571928 tcgtgaacttagctcagttgatatagacaatgcataatatatg 22571886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 5028856 - 5028900
Alignment:
Q  57 gtgaacttagctcatttgatgaagacaatgcataatatatgtaag 101  Q
    |||| ||||||||| ||||| | ||||||||||||||||||||||    
T  5028856 gtgagcttagctcagttgattaggacaatgcataatatatgtaag 5028900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 9459119 - 9459079
Alignment:
Q  56 cgtgaacttagctcatttgatgaagacaatgcataatatat 96  Q
    ||||| ||||||||| ||||| |||||||||||||||||||    
T  9459119 cgtgagcttagctcagttgataaagacaatgcataatatat 9459079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 39068770 - 39068722
Alignment:
Q  56 cgtgaacttagctcatttgatgaagacaatgcataatatatgtaagatc 104  Q
    ||||| ||||||||| ||||| | |||||||||||||||||| ||||||    
T  39068770 cgtgagcttagctcagttgataaggacaatgcataatatatgcaagatc 39068722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 956019 - 955968
Alignment:
Q  63 ttagctcatttgatgaagacaatgcataatatatgtaagatctcggttcaaa 114  Q
    ||||||||||||||  |||||||||||||||||||||| || | ||||||||    
T  956019 ttagctcatttgatagagacaatgcataatatatgtaaaatttgggttcaaa 955968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 25246777 - 25246830
Alignment:
Q  63 ttagctcatttgatgaagacaatgcataatatatgtaaga-tctcggttcaaac 115  Q
    |||||||| ||||| |||||||||||||||||||| |||| ||| |||||||||    
T  25246777 ttagctcagttgataaagacaatgcataatatatgcaagattctgggttcaaac 25246830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 34885874 - 34885923
Alignment:
Q  57 gtgaacttagctcatttgatgaagacaatgcataatatatgtaagatctc 106  Q
    |||| ||||||||| ||| |||||||||||||| ||||||| ||||||||    
T  34885874 gtgagcttagctcagttggtgaagacaatgcatgatatatgcaagatctc 34885923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 31138422 - 31138477
Alignment:
Q  62 cttagctcatttgatgaagacaatgcataatatatgtaagatctcggttcaaaccc 117  Q
    |||| |||| |||||  ||||||||||||||||||| ||||||| |||||||||||    
T  31138422 cttatctcagttgatagagacaatgcataatatatgcaagatctaggttcaaaccc 31138477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 4216462 - 4216420
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatatg 97  Q
    |||||||||||||||| ||||| | ||||||||||||||||||    
T  4216462 tcgtgaacttagctcagttgataaggacaatgcataatatatg 4216420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 1501450 - 1501494
Alignment:
Q  57 gtgaacttagctcatttgatgaagacaatgcataatatatgtaag 101  Q
    |||||||||||||| || || ||||||||||||||||||| ||||    
T  1501450 gtgaacttagctcagttaataaagacaatgcataatatatataag 1501494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 1246 - 1292
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatatgtaag 101  Q
    |||||||||||||||| |||||   ||||||||||||||||||||||    
T  1246 tcgtgaacttagctcagttgatatggacaatgcataatatatgtaag 1292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 190027 - 189989
Alignment:
Q  63 ttagctcatttgatgaagacaatgcataatatatgtaag 101  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  190027 ttagctcagttgttgaagacaatgcataatatatgtaag 189989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 4450261 - 4450302
Alignment:
Q  56 cgtgaacttagctcatttgatgaagacaatgcataatatatg 97  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||    
T  4450261 cgtgagcttagctcagttgataaagacaatgcataatatatg 4450302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 6470678 - 6470633
Alignment:
Q  56 cgtgaacttagctcatttgatgaagacaatgcataatatatgtaag 101  Q
    ||||| |||| |||| ||||| ||||||||||||||||||||||||    
T  6470678 cgtgagcttaactcagttgataaagacaatgcataatatatgtaag 6470633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 8810638 - 8810702
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatatgtaagatctcggttcaaacccga 119  Q
    |||||| ||||||||| ||| | |||||||| ||||||||||| ||| |||  ||||||||||||    
T  8810638 tcgtgagcttagctcagttggtaaagacaatacataatatatgcaaggtctgagttcaaacccga 8810702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 28979336 - 28979291
Alignment:
Q  58 tgaacttagctcatttgatgaagacaatgcataatatatgtaagat 103  Q
    |||||||||||||||||||  ||| ||||||||||||||| |||||    
T  28979336 tgaacttagctcatttgatagagataatgcataatatatgcaagat 28979291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 3139 - 3203
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatatgtaagatctcggttcaaacccga 119  Q
    |||||| ||||||||| ||| | |||||||| ||||||||||| ||| |||  ||||||||||||    
T  3139 tcgtgagcttagctcagttggtaaagacaatacataatatatgcaaggtctgagttcaaacccga 3203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 17230384 - 17230432
Alignment:
Q  55 tcgtgaacttagctcatttgatgaagacaatgcataatatatgtaagat 103  Q
    |||||| ||||||||| ||||   |||||||||||||||||||||||||    
T  17230384 tcgtgatcttagctcagttgacagagacaatgcataatatatgtaagat 17230432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 18697749 - 18697793
Alignment:
Q  56 cgtgaacttagctcatttgatgaagacaatgcataatatatgtaa 100  Q
    ||||||||||||||| |||||||  ||||| ||||||||||||||    
T  18697749 cgtgaacttagctcagttgatgagtacaatacataatatatgtaa 18697793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 22394034 - 22394082
Alignment:
Q  56 cgtgaacttagctcatttgatgaagacaatgcataatatatgtaagatc 104  Q
    ||||| ||||||||| |||||   |||||||||||||||||||||||||    
T  22394034 cgtgagcttagctcagttgatatggacaatgcataatatatgtaagatc 22394082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University