View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_86 (Length: 270)
Name: NF15465_low_86
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 4142189 - 4141923
Alignment:
| Q |
1 |
aaacgtaatgttacctcataagcttcggatatctctttgaatttggcttcagcgtctttcttatttgagggattcttatcagggtgccatttcatggcaa |
100 |
Q |
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| T |
4142189 |
aaacgtaatgttacctcataagcttcggatatctctttgaatttggcttcagcgtcttttttatttgagggattcttatcagggtgccatttcatggcaa |
4142090 |
T |
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| Q |
101 |
gttttctgtaagctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtctacccccatggttctcttgcgttg------ |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4142089 |
gttttctgtaagctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtctacccccatggttctcttgcgttgtgactt |
4141990 |
T |
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| Q |
195 |
------aaattgtttacgatgcgatggtttcaatggttttatcagaattc-gtatcgatgatgattc |
254 |
Q |
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| T |
4141989 |
tttgctgaattgtttacgatgcgatggtttcaatggttttatcagaattcggtatcgatgatgattc |
4141923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 4145778 - 4145620
Alignment:
| Q |
12 |
tacctcataagcttcggatatctctttgaatttggcttcagcgtctttcttatttgagggattcttatcagggtgccatttcatggcaagttttctgtaa |
111 |
Q |
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| T |
4145778 |
tacctcatatgcttcagatatgagtttgaatttagtctcagcatcattcttattgtcaggattcttgtcagggtgccatttcatggcaagttttctatat |
4145679 |
T |
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| Q |
112 |
gctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtc |
170 |
Q |
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| T |
4145678 |
gctttcttcaattcatcgtctgtggcattcttgtcaacctccaaaatctcatagtagtc |
4145620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 38859351 - 38859181
Alignment:
| Q |
11 |
ttacctcataagcttcggatatctctttgaatttggcttcagcgtctttcttatt-tgagggattcttatcagggtgccatttcatggcaagttttctgt |
109 |
Q |
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|||| ||||||||||| || || | || |||||||||||||| ||||| || || | |||| ||||||||||| ||||| |||||||| |||||||||| |
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| T |
38859351 |
ttacatcataagcttctgagatttgcttaaatttggcttcagcttcttttttgttattaggg-ttcttatcaggatgccacttcatggcgagttttctgt |
38859253 |
T |
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| Q |
110 |
aagctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtctacccccatgg |
181 |
Q |
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| T |
38859252 |
aagctttcttcaagtcatcgtctttggcgttccgatcaacctgcagaagcttgtagtagtcaacacccatgg |
38859181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 30479923 - 30479756
Alignment:
| Q |
12 |
tacctcataagcttcggatatctctttgaatttggcttcagcgtctttcttatttgagggattcttatcagggtgccatttcatggcaagttttctgtaa |
111 |
Q |
| |
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||||||||||||||| || || | ||||| || |||||||| ||||| || || | ||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
30479923 |
tacctcataagcttcagaaatttgcttgaacttagcttcagcatcttttttgttggttggatttttatcagggtgccatttcatggcaagtttcctataa |
30479824 |
T |
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| Q |
112 |
gctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtctacccccat |
179 |
Q |
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| T |
30479823 |
gctttcttgagttcatcgtcgttggcattcttatcaacctgcaagattttgtagtagtctacacccat |
30479756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 4800362 - 4800444
Alignment:
| Q |
37 |
ttgaatttggcttcagcgtctttcttatt-tgagggattcttatcagggtgccatttcatggcaagttttctgtaagctttctt |
119 |
Q |
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| T |
4800362 |
ttgaatttggcttcagcatctttcttgttattaggg-ttcttatcaggatgccatttcatagcaagtttccgataagctttctt |
4800444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 49917414 - 49917573
Alignment:
| Q |
8 |
atgttacctcataagcttcggatatctctttgaatttggcttcagcgtctttcttatt-tgagggattcttatcagggtgccatttcatggcaagttttc |
106 |
Q |
| |
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|||||||| ||||||| || || |||| |||||| ||||||||| ||||| ||||| | |||| ||||| ||||||||||||||||| || | ||||| |
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| T |
49917414 |
atgttaccgcataagcctcagagatctgtttgaaacgggcttcagcttcttttttattgttaggg-ttcttgtcagggtgccatttcatagccaattttc |
49917512 |
T |
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| Q |
107 |
tgtaagctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagta |
167 |
Q |
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| T |
49917513 |
tatatgctttcttcaaatcatcttctgtagcatttttatccaccttcaaaatgttatagta |
49917573 |
T |
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