View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_87 (Length: 269)
Name: NF15465_low_87
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 27744315 - 27744539
Alignment:
| Q |
21 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactct |
120 |
Q |
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| T |
27744315 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactct |
27744414 |
T |
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| Q |
121 |
cgcttcaagcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctg |
220 |
Q |
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| T |
27744415 |
cgcttcaagcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctg |
27744514 |
T |
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| Q |
221 |
attttcttcgccattactacaaagt |
245 |
Q |
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||||||||||||||||||||||||| |
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| T |
27744515 |
attttcttcgccattactacaaagt |
27744539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 49513337 - 49513388
Alignment:
| Q |
194 |
tagaaaacaacctcactttaaaatctgattttcttcgccattactacaaagt |
245 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49513337 |
tagaaaacaacctcacttttaaatctgattttcttcgccattactacaaagt |
49513388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 49513261 - 49513321
Alignment:
| Q |
21 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcga |
81 |
Q |
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||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||| |
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| T |
49513261 |
gaagaagaagcttatcaatgatcctcggtttgtaggagtgctcacagaccctctttttcga |
49513321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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