View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15465_low_93 (Length: 252)
Name: NF15465_low_93
Description: NF15465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15465_low_93 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 16565223 - 16565453
Alignment:
| Q |
22 |
gaaactgaaagtgatattcattttgaaataannnnnnnagttaaaacgacatttattttgaaatggagagagtaataaaattcgaagttgaatccttatc |
121 |
Q |
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|||||||||| ||| ||||||||||||| || ||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||| |
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| T |
16565223 |
gaaactgaaaatgacattcattttgaaacaatttttttagttaaaacgacacttattttaaaacaaaaagagtaataaaattcgaagttgaatccttatt |
16565322 |
T |
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| Q |
122 |
agctaaattaacccacttttaaaaaatttcctttgtataacgatagcgattaattgttgtatgacataattgagatttatttatttggttaatattagtt |
221 |
Q |
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| T |
16565323 |
aactaaattaacccacttttaaaaaatttcctttgtataacgatagcgattaattgttgtaagacataattgagatttatttatttggttaatattagtt |
16565422 |
T |
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| Q |
222 |
gataatactatctccgattttaaatatagga |
252 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
16565423 |
gataatactatctccgattttaaatatagga |
16565453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 16600439 - 16600209
Alignment:
| Q |
22 |
gaaactgaaagtgatattcattttgaaataannnnnnnagttaaaacgacatttattttgaaatggagagagtaataaaattcgaagttgaatccttatc |
121 |
Q |
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| T |
16600439 |
gaaactgaaaatgacattcattttgaaacaatttttttagttaaaacgacacttattttaaaacaaaaagagtaataaaattcgaagttgaatccttatt |
16600340 |
T |
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| Q |
122 |
agctaaattaacccacttttaaaaaatttcctttgtataacgatagcgattaattgttgtatgacataattgagatttatttatttggttaatattagtt |
221 |
Q |
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| T |
16600339 |
aactaaattaacccacttttaaaaaatttcctttgtataacgatagcgattaattgttgtaagacataattgagatttatttatttggttaatattagtt |
16600240 |
T |
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| Q |
222 |
gataatactatctccgattttaaatatagga |
252 |
Q |
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| T |
16600239 |
gataatactatctccgattttaaatatagga |
16600209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 61 - 252
Target Start/End: Original strand, 16562799 - 16562990
Alignment:
| Q |
61 |
gttaaaacgacatttattttgaaatggagagagtaataaaattcgaagttgaatccttatcagctaaattaacccacttttaaaaaatttcctttgtat- |
159 |
Q |
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||||||| |||| | ||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16562799 |
gttaaaatgacactcattttaaaacagagagagtagtaaaattcgaagttgaatccttattagctaaattaacccacttttaaaaaatttcctttgtata |
16562898 |
T |
|
| Q |
160 |
aacgatagcgattaattgttgtatgacataattgagatttatttatttggttaatattagttgataatactatctccgattttaaatatagga |
252 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||| |
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| T |
16562899 |
aacaatagcgattaattgttgtacgacataattgagatttatttatttggttaatattagttgataatacgatct-caatcttaaatatagga |
16562990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 61 - 252
Target Start/End: Complemental strand, 16602863 - 16602672
Alignment:
| Q |
61 |
gttaaaacgacatttattttgaaatggagagagtaataaaattcgaagttgaatccttatcagctaaattaacccacttttaaaaaatttcctttgtat- |
159 |
Q |
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||||||| |||| | ||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16602863 |
gttaaaatgacactcattttaaaacagagagagtagtaaaattcgaagttgaatccttattagctaaattaacccacttttaaaaaatttcctttgtata |
16602764 |
T |
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| Q |
160 |
aacgatagcgattaattgttgtatgacataattgagatttatttatttggttaatattagttgataatactatctccgattttaaatatagga |
252 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||| |
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| T |
16602763 |
aacaatagcgattaattgttgtacgacataattgagatttatttatttggttaatattagttgataatacgatct-caatcttaaatatagga |
16602672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 1538 - 1768
Alignment:
| Q |
22 |
gaaactgaaagtgatattcattttgaaataannnnnnnagttaaaacgacatttattttgaaatggagagagtaataaaattcgaagttgaatccttatc |
121 |
Q |
| |
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|||||||||||||| ||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1538 |
gaaactgaaagtgacattcattttgaaacaatttttttgattaaaacgacacttattttgaaacagagagagtaataaaattcgaagttgaatccttatt |
1637 |
T |
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| Q |
122 |
agctaaattaacccacttttaaaaaatttcctttgtataacgatagcgattaattgttgtatgacataattgagatttatttatttggttaatattagtt |
221 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
1638 |
agctaaattaacccacttttaaaaaaattcctttgtataacgatatcgattaatttttgtaagacataattgagatttatttattttgttaatattagtt |
1737 |
T |
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| Q |
222 |
gataatactatctccgattttaaatatagga |
252 |
Q |
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| T |
1738 |
gataatactatctccgattttaaacatagga |
1768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 44645550 - 44645587
Alignment:
| Q |
63 |
taaaacgacatttattttgaaatggagagagtaataaa |
100 |
Q |
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| T |
44645550 |
taaaacgacatttattttgaaacggatagagtaataaa |
44645587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 9066590 - 9066622
Alignment:
| Q |
63 |
taaaacgacatttattttgaaatggagagagta |
95 |
Q |
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| T |
9066590 |
taaaacgacatttattttgaaatggagggagta |
9066622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 39504708 - 39504676
Alignment:
| Q |
63 |
taaaacgacatttattttgaaatggagagagta |
95 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
39504708 |
taaaacgacatttattttgaaatggagggagta |
39504676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 6596522 - 6596486
Alignment:
| Q |
62 |
ttaaaacgacatttattttgaaatggagagagtaata |
98 |
Q |
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| T |
6596522 |
ttaaaacgacatttattttaaaatggagggagtaata |
6596486 |
T |
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