View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15466_low_2 (Length: 492)
Name: NF15466_low_2
Description: NF15466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15466_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 41165619 - 41165385
Alignment:
| Q |
20 |
gacgctaaactgagcgagcgagttggctcatctcatctcaactcaactcataactcgttaaccattttcatcacatcccaacttcattccttcccttcgc |
119 |
Q |
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| T |
41165619 |
gacgctaaactgagcgagcgagttggctcatctca-----aatcaactcataactcgttaaccattttcatcacatcccaacctctttccttcccttcgc |
41165525 |
T |
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| Q |
120 |
ctgtggttgaggatggcgatgaaagatcagatcaacgataaacacgatgaaccgattctctcaaagagagattacatcaacattcattctcaccccaatc |
219 |
Q |
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| T |
41165524 |
ctgtggttgaggatggcgatgaaagatcagatcaa---------cgatgaaccgattctctcaaagagagattacatcaacattcattctcaccccaatc |
41165434 |
T |
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| Q |
220 |
ttatcaagattttgcgcaaacaaggttcctacctacccttctccttcaac |
269 |
Q |
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| T |
41165433 |
ttatcaagattttgcgcaaacaaggttcctacctaccc-tctccttcaac |
41165385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 319 - 481
Target Start/End: Complemental strand, 41165332 - 41165171
Alignment:
| Q |
319 |
ctcagttcgtcctagaattgttccaccagaaattgaactcggttcgggttctcccaaacatttctattcatttcattttattgtgattataatatactta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
41165332 |
ctcagttcgtcctagaattgttccaccagaaattgaacccggttcgggttctcccaaacatttctattcatttcattttattgtgattatta-atactta |
41165234 |
T |
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| Q |
419 |
acctcattatttataatgtaagtagtttaggacaaatttgcaatgctgaatgttttaattcat |
481 |
Q |
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| T |
41165233 |
acctcgttaattataatgtaagtagtttaggacaaatttgcaatgctgaatgttttaattcat |
41165171 |
T |
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