View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15466_low_3 (Length: 296)
Name: NF15466_low_3
Description: NF15466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15466_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 13930410 - 13930133
Alignment:
| Q |
1 |
caaaaatataaaactctcaaaccnnnnnnncttatcaatcttcatcttcttcatttaaccttcattatcttcccatgacacaaactcattttttcagatc |
100 |
Q |
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| T |
13930410 |
caaaaatataaaactctcaaaccaaaaaaacttatcaatcttcatcttcttcatttaaccttcattatcttcccatgacacaaactcattttttcagatc |
13930311 |
T |
|
| Q |
101 |
taattttcaggtttatagatttttcaccatcaacaactcctattttaatcacaaaaagtttatagatttttcaccatctcataactaccccttcaccacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13930310 |
taattttcaggtttatagatttttcaccatcaacaactcctattttaatcacaaaaagtttatagatttttcaccatctcataactaccccttcaccacc |
13930211 |
T |
|
| Q |
201 |
atcaccatgatataaattaaagctttaataaagagtacccaacaagttgtaaaaactcaacaattgaagaagcaatag |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13930210 |
atcaccatgatataaattaaagctttaataaagagtacccaacaagttgtaaaaactcaacaattgaagaagcaatag |
13930133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14070939 - 14070868
Alignment:
| Q |
1 |
caaaaatataaaactctcaaaccnnnnnnncttatcaatcttcatcttcttcatttaaccttcattatcttc |
72 |
Q |
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| T |
14070939 |
caaaaatataaaactctcaaaccaaaaaaacttatcaatcttcatcttcttcatttaaccttcattatcttc |
14070868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 37472750 - 37473041
Alignment:
| Q |
1 |
caaaaatataaaactctcaaaccnnnnnnncttatcaatcttcatcttcttcatttaaccttcattatcttcccatgacac----------aaactcatt |
90 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
37472750 |
caaaaatataaaactctcaaaccaaaaaaacttatcaatcttcatcttcttcatttaaccttcatcatcttcccatgacacccatataaacaaactcatt |
37472849 |
T |
|
| Q |
91 |
ttttcagatctaattttcaggtttatagatttttcaccatcaacaac---tcctattttaatcacaaaaagtttatagatttttcaccatctcataacta |
187 |
Q |
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||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37472850 |
tttccagatctaattttcagggttatagacttttcaccatcaacaacaattcctattttaatcacaaaaagtttatagatttttcaccatctcatcacta |
37472949 |
T |
|
| Q |
188 |
cccc-ttcaccaccatcaccatgatataaattaaagctttaataaagagtacccaacaagttgtaaaaactcaacaattgaagaagcaatag |
278 |
Q |
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| T |
37472950 |
cccccttcaccaccatcaccaagatataaattaaagctttaataaagagtacccaacaagttgtataaactcaacaattgaagaagcaatag |
37473041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 278
Target Start/End: Complemental strand, 19524997 - 19524737
Alignment:
| Q |
31 |
cttatcaatcttcatcttcttcatttaaccttcattatcttcccatgacac----------aaactcattttttcagatctaatttt-caggtttataga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||||| ||||||||||||| |||||||||||| |
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| T |
19524997 |
cttatcaatcttcatcttcttcatttaaccttcatcatcttcgcatgacacccatatgaacaaacccatttttccagatctaatttttcaggtttataga |
19524898 |
T |
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| Q |
120 |
tttttcaccatcaacaac---tcctattttaatcacaaaaagtttatagattttt-caccatctcataactaccccttcaccaccatcaccatgatataa |
215 |
Q |
| |
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|||| ||||||||||||| ||||||| ||||||||||| |||||| ||||||| ||||||||||| ||||||||||||| |||||||||| ||| | |
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| T |
19524897 |
ttttccaccatcaacaacaactcctattctaatcacaaaaggtttattgattttttcaccatctcatcactaccccttcactaccatcaccaagatg--a |
19524800 |
T |
|
| Q |
216 |
attaaagctttaataaagagtacccaacaagttgtaaaaactcaacaattgaagaagcaatag |
278 |
Q |
| |
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|||| || ||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
19524799 |
attatagttttaataaaaagtacccaacaaattgtataaactccacaattgaagaagcaatag |
19524737 |
T |
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